PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000190038
Common NameGATA5
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 359aa    MW: 38758.4 Da    PI: 9.7806
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000190038genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-19211244134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  MDP0000190038 211 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 244
                    *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-13205245No hitNo description
SMARTSM004014.3E-21205256IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-15209244IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.466209241IPR000679Zinc finger, GATA-type
CDDcd002021.47E-14210242No hitNo description
PROSITE patternPS003440211236IPR000679Zinc finger, GATA-type
PfamPF003205.1E-17211244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAPPPYHNLS PPSPFTLELS GDHHGDHDLQ YHHLFNLEPQ ASFSSSSSLS SALFLTPAQV  60
QGRSDDHYRE PHQFQFQLLE ADHNIVPHGG SHDHDHQAIE NEGGSGTVLK LSISKNGAVG  120
NGNPGTDHET STSSVKWMSS KMRMMRKMSN PDQTSSSSTS SDDKPISMKL SSHKFEEQKL  180
QHPSSQLGAD MISCSNNSSN NMNNVPIIRV CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ  240
RKARRAMAAA AAAASGTTLT VAAPSMKSSK VQPKANKSRV SSTVPFKKRP YNKLSSSPSS  300
RGKSKKLCFE DFTISMKNNS SSGNPTAATT TTALQRVFPQ DEKEAAILLM ALSCGLVHG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.123080.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280882.10.0transcription factor GATA-5
TrEMBLD9ZIZ20.0D9ZIZ2_MALDO; GATA domain class transcription factor
STRINGXP_008337705.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-18cytokinin-responsive gata factor 1