PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000189749
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 327aa    MW: 36374.5 Da    PI: 8.1207
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000189749genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.41.1e-29341343100
            TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsssgkaaksaa. 95 
                    ++kdr sk++T +g+RdRR Rls ++a++++d+qd+LG+d+ sk+i+WL++++k+ai +l g++++ +   +c++++   ++ ++++g+++  +  
  MDP0000189749  34 ARKDRRSKVYTLKGPRDRRFRLSPHTAIQLYDVQDRLGYDRLSKAIDWLIEKSKEAIEALSGSEQPCQdyYDCTNSNVFGQQTEQEIGEQSMHQLw 129
                    79*************************************************************777775555544444444444444433333333 PP

            TCP  96 kskks 100
                    ++ +s
  MDP0000189749 130 NHPES 134
                    33332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2634114IPR005333Transcription factor, TCP
PROSITE profilePS5136926.6533593IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MATSKSAFKQ QQVDNTRYGK IVKVNGGHIV RSMARKDRRS KVYTLKGPRD RRFRLSPHTA  60
IQLYDVQDRL GYDRLSKAID WLIEKSKEAI EALSGSEQPC QDYYDCTNSN VFGQQTEQEI  120
GEQSMHQLWN HPESNRVLET MSNVGPMNNV NNFKEPVFDQ LSSLNYAEEA LDPTSSLSDS  180
KVTEMGWFQS LVAWNYNAGD GGEICPYNSS HRLRGLQKLS CCCSIHKMYP SSSSSSPQKP  240
IGLRPSTTGL TRYGSSIGSL PNSAVDSVIG TAADFDFLSL RSQPLIGHYF FGDGHDDSFS  300
LTSSKSTFKV NSSNGGYREA STTKPLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-164093154Putative transcription factor PCF6
5zkt_B3e-164093154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008383882.11e-159transcription factor TCP1-like
TrEMBLA0A498ISM71e-155A0A498ISM7_MALDO; Uncharacterized protein
STRINGXP_008383882.11e-158(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148631014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-33TCP domain protein 10