PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000189347
Common NameAP2D16
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 228aa    MW: 24445.1 Da    PI: 4.5623
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000189347genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.7e-1662111155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+ +l+g
  MDP0000189347  62 PVYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPKPEMAAAAYDVAAIALKG 111
                    68****9.55.6*********843...5***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.40149119IPR001471AP2/ERF domain
PfamPF008473.5E-962111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-2563120IPR001471AP2/ERF domain
SMARTSM003801.1E-2563125IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1763121IPR016177DNA-binding domain
PRINTSPR003672.6E-56475IPR001471AP2/ERF domain
CDDcd000181.00E-1464121No hitNo description
PRINTSPR003672.6E-5101121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MADPYSNVPK IPIDQPTTTS NPNAFIQIPP TLPNPPTSTL PDDFSSSSSP RGSTSGSSRR  60
HPVYRGIRCR SGKWVSEIRE PRKTTRIWLG TYPKPEMAAA AYDVAAIALK GPDTPLNFPN  120
SILTYPIPAS SAASDIRSAA ARAAQSRADM LIPQERESGG RSEPGGVDNE GGGGGVVSQQ  180
QEEYMDEEEL LNMPNLLVDM AEGMLVSPPR ISSDNSPGNS DGENLWSY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.168670.0stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324400.0GU732440.1 Malus x domestica AP2 domain class transcription factor (AP2D16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315893.11e-161ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ903e-52ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A498JGM11e-163A0A498JGM1_MALDO; Uncharacterized protein
STRINGXP_008376523.11e-164(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-39ERF family protein
Publications ? help Back to Top
  1. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]