PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000188716 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 326aa MW: 36735.2 Da PI: 8.5746 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.3e-19 | 144 | 197 | 2 | 55 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa++ MDP0000188716 144 RKKLRLSKDQSGILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARW 197 788899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 88.7 | 7.4e-29 | 144 | 203 | 1 | 60 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlE 60 +kk+rlsk+q+ +LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRAR+ +q MDP0000188716 144 RKKLRLSKDQSGILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARWYFRQAK 203 69****************************************************999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 8.5E-28 | 2 | 118 | IPR006712 | HD-ZIP protein, N-terminal |
SuperFamily | SSF46689 | 1.33E-17 | 134 | 197 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.827 | 140 | 200 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-16 | 142 | 204 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.86E-16 | 144 | 197 | No hit | No description |
Pfam | PF00046 | 1.9E-16 | 144 | 197 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-18 | 144 | 197 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.3E-5 | 171 | 180 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 2.3E-5 | 180 | 196 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.0E-8 | 216 | 250 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.1E-24 | 216 | 259 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MMVEREDLGL GLSLNFPHTH NNQSSSRFQL NLMPSLLPTS AAASSSPSGF LPQMPLWNNP 60 LPSSDLNSNS ETCRAGPRSF LRGIDVNQLP PTGDCEEAGV SSPNSTVSTV SGKRSERDIN 120 GEDLDLERDC SRGLSDEEDG ETSRKKLRLS KDQSGILEES FKEHNTLNPK QKLALAKQLG 180 LRPRQVEVWF QNRRARWYFR QAKNIYLIYS YTPALKQTEV DCEFLKRCCE NXTERNRRLQ 240 KEVQELRALK LSPQFYMQMT PPTTLTMCPS CERVGVPTNS SSSAADPRPH SQMGPVQRHP 300 LPIKPWASAA TVPHRPLPFD IFHPRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 148 | SRKKLRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.10023 | 3e-89 | bud| fruit| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and stems. {ECO:0000269|PubMed:8106086}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008367712.2 | 0.0 | homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | Q05466 | 2e-93 | HAT4_ARATH; Homeobox-leucine zipper protein HAT4 | ||||
TrEMBL | A0A498JUL3 | 0.0 | A0A498JUL3_MALDO; Uncharacterized protein | ||||
STRING | XP_008367712.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1239 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 3e-73 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000188716 |