PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000188626
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 317aa    MW: 35615.2 Da    PI: 5.4324
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000188626genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025727323
                   ETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                   C++C+k+Fs+   +  H+r+H
  MDP0000188626  7 CKICNKRFSNGKAMGGHMRSH 27
                   *******************99 PP
2zf-C2H212.50.00045181203123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C+k+F +   L  H  +H
  MDP0000188626 181 YKCETCDKVFISYQALGGHRASH 203
                    9**********999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.16E-5232No hitNo description
PROSITE profilePS5015710.138532IPR007087Zinc finger, C2H2
SMARTSM003550.078527IPR015880Zinc finger, C2H2-like
PfamPF139127.6E-9629IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PfamPF139121.5E-10181205IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64181203IPR007087Zinc finger, C2H2
SMARTSM003550.037181203IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.96E-8181203No hitNo description
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SuperFamilySSF576673.96E-8237264No hitNo description
PfamPF139126.7E-9241264IPR007087Zinc finger, C2H2
SMARTSM003550.62242264IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806242264IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEKQRICKIC NKRFSNGKAM GGHMRSHLAK LPLPPKPQSP PQQQHQQLSD SPESSSPPFS  60
TSNRAMHSSL DSAVVHDGGD SDSESHPRNP THRRSKRRRK VIGKSSLTMP FEAEQVSSVT  120
DAFSTEDVAM CLIMLSMDKW EKVKVKNGVD ESADEEEEDE SDDRGGFGFR SHARVRTRGK  180
YKCETCDKVF ISYQALGGHR ASHKKILKTQ VFDDYEEEED EDFEEDDGQN GNLAVVENHR  240
TFECSVCFKQ FDSGQALGGH KKVHYYNNLT TNAPTRNVNL PSSSTNFVDN LVIDLNLPAP  300
EEEEEEVSQV EFSTVSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376981.10.0zinc finger protein ZAT9-like
TrEMBLA0A498JLV70.0A0A498JLV7_MALDO; Uncharacterized protein
STRINGXP_008376981.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-39C2H2-like zinc finger protein