PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000188242
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 404aa    MW: 43754.5 Da    PI: 8.6103
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000188242genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.18e-38214273261
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                    +++   cprC+s+ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k++
  MDP0000188242 214 NQQPHGCPRCQSMNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKMKRA 273
                    578889**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM008889.9E-468194IPR014038Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domain
PROSITE patternPS0082406876IPR001326Translation elongation factor EF1B, beta/delta chains, conserved site
Gene3DG3DSA:3.30.70.602.5E-1780136IPR014717Translation elongation factor EF1B/ribosomal protein S6
PfamPF007364.4E-1480132IPR014038Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domain
CDDcd002921.00E-1680130No hitNo description
SuperFamilySSF549841.01E-1380135IPR014038Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domain
ProDomPD0074787.0E-23215267IPR003851Zinc finger, Dof-type
PfamPF027014.2E-33216272IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.453218272IPR003851Zinc finger, Dof-type
PROSITE patternPS013610220256IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006414Biological Processtranslational elongation
GO:0005853Cellular Componenteukaryotic translation elongation factor 1 complex
GO:0003677Molecular FunctionDNA binding
GO:0003746Molecular Functiontranslation elongation factor activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
KLTXDDIKVY AAVLEKPADS FANVSKWYDA VXFQLASTFP XKAAGVRVSS GKAGTAAPVP  60
AAAAGGDDDD DLDLFGDETE EDKKAVRSVE MEGLFWDASK LVSVGYGIKK LQIMLTIVDD  120
LVSVDDLIEE QLTVEPRQQA HPHLCLGPAL KAQSGFSPPA VPSTCSSPHT TGQPNAVINF  180
TPQPQLLLAQ LTRLPLRADQ QNQDQRLKAA EQQNQQPHGC PRCQSMNTKF CYYNNYSLSQ  240
PRYFCKACRR YWTQGGTLRN VPVGGGCRKM KRAKGGSSSA SASRTVQPQP SQKEQDMQNT  300
LGIGGDSVGM STENPSGGLA VHHQYYPGAS HGYLSSLAGL QSLNQSQPFN VGGGHDPASN  360
MSLLQGFNLP APAWNGQMVQ SQPQQQRRMV HLAPCASKKK KRWV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.13201e-113bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41453258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.15e-28TARGET OF MONOPTEROS 6