PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000187636

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

G2-like

Protein Properties

Length: 480aa MW: 53521.6 Da PI: 7.5163

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000187636	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.8	1.2e-33	65	119	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl MDP0000187636 65 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 119 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.014	62	122	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-31	63	120	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.09E-16	64	120	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-23	65	120	IPR006447	Myb domain, plants
Pfam	PF00249	6.0E-10	67	118	IPR001005	SANT/Myb domain
Pfam	PF14379	7.6E-9	172	194	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
Pfam	PF14379	5.8E-10	224	249	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MMYHHQQQHQ HQHQHQGKKI IHSSSASSSR ISMPNISSER HLFLQQGDQN SPAGDSGLVL 60 STDAKPRLKW TPDLHERFIE AVNQLGGADK ATPKTVMKLM GIPGLTLYHL KSHLQKYRLS 120 KNLHGGHVTS SLTKIGPVPV SVAGERLISE ANGSQMSTMS TGIAPQSNKG LHISETLEMQ 180 IEVQRRLHEQ LEVRACSWHH SVEHKLFPII AALFLQFVPT ENQVQRHLQL RIESQGKYLQ 240 SVLEKAQETL GRQNLGXVGL EAAQVQLSEL VSTVSTQCLN SSFTELKELQ GLCPQQTQMN 300 QQPADCSMDS CLTFCEGSKK DQDQIHSSGV PLRPNYNGRV TAVLEQKDTE RAQPPMLQNT 360 SQLNWCEDMK ENNMFISSIS KDAEKRMFPA AETRSSDLSM SIGLQGERWN IDSKGRDSDD 420 SFLERTNSSR ADSAKVKGAK VSXGYRSVPY FAAKLDLNAH DDNDASSSCR QFDLNGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MMYHHQQQHQ HQHQHQGKKI IHSSSASSSR ISMPNISSER HLFLQQGDQN SPAGDSGLVL  60
STDAKPRLKW TPDLHERFIE AVNQLGGADK ATPKTVMKLM GIPGLTLYHL KSHLQKYRLS  120
KNLHGGHVTS SLTKIGPVPV SVAGERLISE ANGSQMSTMS TGIAPQSNKG LHISETLEMQ  180
IEVQRRLHEQ LEVRACSWHH SVEHKLFPII AALFLQFVPT ENQVQRHLQL RIESQGKYLQ  240
SVLEKAQETL GRQNLGXVGL EAAQVQLSEL VSTVSTQCLN SSFTELKELQ GLCPQQTQMN  300
QQPADCSMDS CLTFCEGSKK DQDQIHSSGV PLRPNYNGRV TAVLEQKDTE RAQPPMLQNT  360
SQLNWCEDMK ENNMFISSIS KDAEKRMFPA AETRSSDLSM SIGLQGERWN IDSKGRDSDD  420
SFLERTNSSR ADSAKVKGAK VSXGYRSVPY FAAKLDLNAH DDNDASSSCR QFDLNGFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-21	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-21	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-21	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-21	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-21	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-21	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-21	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-21	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269\|PubMed:15923329}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008360528.2	0.0	myb-related protein 2-like
Swissprot	Q9SQQ9	1e-127	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A498I2G1	0.0	A0A498I2G1_MALDO; Uncharacterized protein
STRING	XP_008360528.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-123	G2-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000187636

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]