PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000187520

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C3H

Protein Properties

Length: 315aa MW: 34344.1 Da PI: 8.1915

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000187520	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	24	43	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +++r+G CkyG C+++H++ MDP0000187520 24 YYLRSGGCKYGKDCRYSHSK 43 8*****************95 PP
2	zf-CCCH	37.5	3.9e-12	63	88	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG Cky ++C+F+H+ MDP0000187520 63 PGERECPYYMRTGSCKYASNCRFNHP 88 5789*********************9 PP
3	zf-CCCH	27.6	5e-09	199	225	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f+rtG Ck+ ++Ck++H++ MDP0000187520 199 PGQPDCSYFLRTGDCKFKSNCKYHHPK 225 5789*********************96 PP
4	zf-CCCH	34.3	3.9e-11	247	270	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G+ CkF H+ MDP0000187520 247 QNICTHYSRYGICKFGPACKFDHS 270 679********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.3	11	43	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.4E-4	24	42	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-5	24	43	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.939	24	44	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.5E-6	62	89	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.131	62	90	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.1E-9	64	88	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.15E-6	65	89	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.2E-5	68	87	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-4	198	225	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.352	198	226	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-6	200	225	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-5	203	226	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-6	242	270	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.446	244	272	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.6E-4	244	271	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-8	247	270	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-4	249	271	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MSVTVSSLCA LYSNICNVYG GGLYYLRSGG CKYGKDCRYS HSKVKPSVAP VLELNFLGLP 60 IRPGERECPY YMRTGSCKYA SNCRFNHPDP TAIGGSDPPS XXGKDGPASL QVASQXTVAX 120 WSAPRPLNEA PVYTPMMIPP PQGVSSQNSE WNGCRAPAYI PESSMPAXPP YMMNNSVTET 180 NVYKQYPLQX QVEEFPERPG QPDCSYFLRT GDCKFKSNCK YHHPKTQTAV APLFTLSDKG 240 LPLRPDQNIC THYSRYGICK FGPACKFDHS SHISSSTTSG PDHQLPYGDW ATTNGAGIAG 300 SRSGTDGTSQ PQPVQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13055	6e-97	fruit\| leaf\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028959756.1	0.0	zinc finger CCCH domain-containing protein 67-like
Swissprot	Q9STM4	1e-99	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A498JJL4	0.0	A0A498JJL4_MALDO; Uncharacterized protein
STRING	XP_008366115.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4156	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	3e-98	C3H family protein

Link Out ? help Back to Top
Phytozome	MDP0000187520

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]