PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000187369
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 160aa    MW: 17779.7 Da    PI: 6.9349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000187369genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-161969255
            AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr ++ +g+++AeI+d       +    +lg+f taeeAa+a+++a+ +++g
  MDP0000187369 19 RYRGVRTRP-WGKFAAEIHDsT-R---QgGWLWLGTFNTAEEAARAYDRAAFSMRG 69
                   59****999.**********33.2...239************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-281983IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-271978IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-201977IPR016177DNA-binding domain
CDDcd000188.06E-231977No hitNo description
PfamPF008472.4E-121969IPR001471AP2/ERF domain
PROSITE profilePS5103220.5741977IPR001471AP2/ERF domain
PRINTSPR003672.1E-92031IPR001471AP2/ERF domain
PRINTSPR003672.1E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MERGQSKGKA KEEGQRDMRY RGVRTRPWGK FAAEIHDSTR QGGWLWLGTF NTAEEAARAY  60
DRAAFSMRGP LAILNCPSEH GLKDARHSAV TTSSSSSSSS SSFSSSLRIH NATRTEFGRE  120
IFEFECLDDS VLEDLLDFEN NSKTPVFLCS AGGVGFEPFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-291913114114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687650.0HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008382908.11e-115ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC55e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A498IVC61e-100A0A498IVC6_MALDO; Uncharacterized protein
STRINGXP_008382908.11e-115(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]