PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000187050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 329aa    MW: 36822 Da    PI: 4.9706
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000187050genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-092592912355
                    SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  MDP0000187050 259 PYPTEEEKLQLSEMTGLDQKQINNWFINQRKRH 291
                    8*****************************885 PP

2ELK39.11.6e-13211232122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK++Ll+KYsgyL+sL++EF+
  MDP0000187050 211 ELKDMLLNKYSGYLSSLRKEFL 232
                    9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.2E-1768112IPR005540KNOX1
PfamPF037901.5E-1770110IPR005540KNOX1
SMARTSM012561.1E-24115166IPR005541KNOX2
PfamPF037911.3E-23118165IPR005541KNOX2
SMARTSM011883.1E-7211232IPR005539ELK domain
PROSITE profilePS5121311.139211231IPR005539ELK domain
PfamPF037891.9E-10211232IPR005539ELK domain
PROSITE profilePS5007112.779231294IPR001356Homeobox domain
SuperFamilySSF466893.25E-19233300IPR009057Homeodomain-like
SMARTSM003892.4E-12233298IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-27236296IPR009057Homeodomain-like
PfamPF059203.7E-17251290IPR008422Homeobox KN domain
CDDcd000863.60E-12257295No hitNo description
PROSITE patternPS000270269292IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEDFHRMNAG VISAGSDDHV NVHQQVENMA TSTSSANCGG FHGSGHVVDD HNMLLFATEG  60
LGSDHMSDLI KSQIASHPRF PDLVAAYLEC QKVGAPAEMK NLLEEIGRVS HPMSTCSEIG  120
ADPELDEFME SYIEVLHRYK EELSKPFDEA TTFLTNIQTQ LSNLCKGTFS KTWDYHSDEG  180
VGSSEEELSC GEVEAAEGQD TGGARSSGDR ELKDMLLNKY SGYLSSLRKE FLKKRKKGKL  240
PKDARSTLSD WWITHYRWPY PTEEEKLQLS EMTGLDQKQI NNWFINQRKR HWKPSEDMRF  300
ALKEGVGGSI GGPMMFDTGV GTGNIHDDM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226235LRKEFLKKRK
2232236KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.220760.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2817730.0GQ281773.1 Prunus persica class I KNOX homeobox transcription factor KNOPE6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350595.10.0homeobox protein knotted-1-like 1 isoform X1
SwissprotQ9FP292e-99KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A498IJ090.0A0A498IJ09_MALDO; Uncharacterized protein
STRINGXP_008350595.10.0(Malus domestica)
STRINGXP_008359851.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-79KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]