PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000186886
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 270aa    MW: 31711.6 Da    PI: 7.7818
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000186886genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.52e-091159350
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE.EEEE-TTSEEEEEE CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaeva.viifsstgklyeys 50
                   i+ ++ r  t+ kR++  + K +E+ +LC++ ++ vi+  s+ k+  ++
  MDP0000186886 11 ISHERSRRATLKKRKASFFRKLNEITTLCGVIACaVIYDTSDTKVDVWP 59
                   889999************************9877255557777887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.521151IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-5160IPR002100Transcription factor, MADS-box
CDDcd002662.94E-17285No hitNo description
SuperFamilySSF554553.27E-15394IPR002100Transcription factor, MADS-box
Gene3DG3DSA:4.10.280.104.0E-6539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF003191.8E-101154IPR002100Transcription factor, MADS-box
Gene3DG3DSA:4.10.280.104.0E-6173199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-5174201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAKNRTKHEL ISHERSRRAT LKKRKASFFR KLNEITTLCG VIACAVIYDT SDTKVDVWPS  60
PQEAFYVLEK IKNLPEERQG KFKLDQESFL KNNISKQNRQ LERVRFKNQE LDEKLLWIEY  120
LELECKNFLD PGRLESLIGL DDQLDKRIVF LTKRIEFFEG VGRNQVDAGL DSDEMQTNTA  180
DMLDEAVEYV KFLQKQIQSD NYLQLPCSIV ILSFNVYVVI GIKEDLGERL STCIWLMIVL  240
NTTTKPYSTK CNRLYELFEI SQLTLHRQIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017182559.21e-101agamous-like MADS-box protein AGL80
TrEMBLM5XZI54e-76M5XZI5_PRUPE; MADS-box protein 29
STRINGXP_008352802.11e-111(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144641115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.21e-20AGAMOUS-like 87