PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000186558

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

M-type_MADS

Protein Properties

Length: 215aa MW: 23975.5 Da PI: 10.6789

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000186558	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.5	2.6e-26	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 i++k +rqvtfskRr g++KKA ELSvLC++ev ++ifs +g+lye++s MDP0000186558 10 LIDDKLRRQVTFSKRRSGLIKKARELSVLCGVEVGLVIFSAKGRLYEFCS 59 69**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-34	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.38	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.97E-26	2	64	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.32E-32	2	59	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-25	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-23	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MGRGKVELKL IDDKLRRQVT FSKRRSGLIK KARELSVLCG VEVGLVIFSA KGRLYEFCSG 60 ERRIFKSIDA SNKRKRPPFS LPCRCAPSLT DGRLVAYPIS PKMIARLSPR ISVVVGLSSV 120 SDWVHCPYSF GFPLTSSRFS ACCTRFKLAP KLSIIPNRNN YLDPLPLCIT RMLSYTLPLV 180 SPQVLHLFVG YLLSIEKPLL AIVFATHLES GSSLT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-14	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-14	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_R	1e-14	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_S	1e-14	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_A	1e-14	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_B	1e-14	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_C	1e-14	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_D	1e-14	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_E	1e-14	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_F	1e-14	1	61	1	61	Myocyte-specific enhancer factor 2B

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.14463	1e-101	bud\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB524589	2e-86	AB524589.1 Pyrus pyrifolia var. culta FLC mRNA for flowering locus C-like protein, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	2e-26	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	MDP0000186558