PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000184308 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 425aa MW: 47504 Da PI: 10.4631 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 73.3 | 3.1e-23 | 336 | 386 | 8 | 57 |
EEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS WRKY 8 rKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 rKYGqK++kgs++pr YYrC++ gCp+ k+ver+ +dp ++++tYe eH+ MDP0000184308 336 RKYGQKPIKGSPYPRRYYRCSTVkGCPAXKHVERAPDDPAMLIVTYEREHH 386 9*******************9888***********************9996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.812 | 336 | 386 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-23 | 336 | 386 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-19 | 336 | 386 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-19 | 336 | 386 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-22 | 336 | 390 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 425 aa Download sequence Send to blast |
MTRFKPIVQI QYHTQDRSPI TSSPPSREPK PTEKHMQQSY ILSMCMFVEP LLQLRASKIS 60 DSLEGKRFCR SVRKIRACVR VFGSSRRSST DLKAAYAASP DCRHRFRKSS TDSNEASFFA 120 IHSLCHSHNE SRKPYPPLLL YRAHLDGKIS TWGRKRKAEL SSQHLVFFIP LSSSVLRPKG 180 SAIRDPKAIL EDLSNKVKAL SESKEFAIKA TEAAKCQAKQ LEEANCGNLM GSDGAWKQDV 240 ESARAQYMGV ITELNSAKQE LQKIRQDCDA SLEAKATAIK QVAEAEDAAK ANAGRERRQR 300 RGSRPREGRL LQGQDVGRRI LANRRQDGRA SGGVGRKYGQ KPIKGSPYPR RYYRCSTVKG 360 CPAXKHVERA PDDPAMLIVT YEREHHTCSL IRGSPSSSAP PPCGGISNHM GAHKDDWIMT 420 LTQVI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-14 | 336 | 385 | 21 | 69 | WRKY transcription factor 1 |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.16499 | 9e-69 | bud| cell culture| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ996068 | 5e-61 | KJ996068.1 Pyrus x bretschneideri WRKY domain class transcription factor (WRKY16) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31550.1 | 2e-23 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000184308 |