PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000184294 | ||||||||
Common Name | mads13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26839.2 Da PI: 8.4234 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.3 | 1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+t+k++ey+s MDP0000184294 9 KLIENQTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTNKMHEYIS 59 569**********************************************86 PP | |||||||
2 | K-box | 79.3 | 9.4e-27 | 71 | 163 | 1 | 93 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yqk+ g +l+ +++es++ l kLk+ +++L+re+R++lG dL+ Ls+ eL +L +++++sl iR++K++++++q+e+++kk k+l+++ + MDP0000184294 71 YQKTMGIDLWRTHEESMKDTLWKLKEINNKLRREIRQRLGHDLNGLSFDELASLDDEMQSSLDAIRQRKYHVIKTQTETTKKKVKNLEQRRGN 163 78999999*******************************************************************************998755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.188 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-35 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.12E-37 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-23 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.0E-19 | 82 | 164 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.094 | 84 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGRGKIEIKL IENQTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TNKMHEYISP 60 TTTTKSMYDD YQKTMGIDLW RTHEESMKDT LWKLKEINNK LRREIRQRLG HDLNGLSFDE 120 LASLDDEMQS SLDAIRQRKY HVIKTQTETT KKKVKNLEQR RGNMLHGYFD QEAAGEDPQY 180 GYEDNEGDYE SALALSNGAN NLYTFHLHHP NLHHGGSSLG SSITHLHDLR LA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 5e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 5e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 5e-15 | 1 | 59 | 1 | 59 | MEF2C |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ251116 | 0.0 | AJ251116.1 Malus domestica mRNA for B-type MADS box protein (mads13 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315678.1 | 1e-172 | floral homeotic protein DEFICIENS-like | ||||
Swissprot | Q003J2 | 1e-107 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | Q8VWZ4 | 1e-171 | Q8VWZ4_MALDO; B-type MADS box protein | ||||
STRING | XP_008344258.1 | 1e-173 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-63 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000184294 |
Publications ? help Back to Top | |||
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