PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000183865

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YA

Protein Properties

Length: 156aa MW: 16687.2 Da PI: 8.369

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000183865	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	37.2	9.4e-12	1	22	37	58
CBFB_NFYA 37 pylheSRhkhAlrRpRgsgGrF 58 pylheSRh hAlrR+Rg+gGrF MDP0000183865 1 PYLHESRHLHALRRARGCGGRF 22 8********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02045	9.9E-9	1	22	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	19.189	1	25	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
PYLHESRHLH ALRRARGCGG RFLNTKKQDA NDENSSLEKG MNLDGNHSAQ SAKSGFECCP 60 NTSNGNVDSS NVQQDGSGPW FRTHNHHTHS NGNGNDHGPS SAYPSTFSDS RENMQLKGLS 120 RGAIPSEAQG VHGVSWGKPG CAMSLSGKSF LALVTL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12529	1e-113	fruit\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354754.1	8e-78	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBL	A0A498JKA6	2e-98	A0A498JKA6_MALDO; Uncharacterized protein
STRING	XP_009354754.1	3e-77	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8962	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	1e-19	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	MDP0000183865