PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000183326
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 213aa    MW: 22673.7 Da    PI: 10.2388
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000183326genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20116166155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +g+ G+r+++ +g+W+AeIrdp+    + kr +lg+f+taeeAa+a+++a + l+g
  MDP0000183326 116 KGFVGIRQRP-WGKWAAEIRDPN----QgKRLWLGTFDTAEEAAAAYDRASLMLRG 166
                    5899******.**********93....24*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.93E-31116174No hitNo description
PROSITE profilePS5103223.051117174IPR001471AP2/ERF domain
PfamPF008471.8E-13117166IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22117174IPR016177DNA-binding domain
SMARTSM003801.7E-34117180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-30118174IPR001471AP2/ERF domain
PRINTSPR003676.5E-10118129IPR001471AP2/ERF domain
PRINTSPR003676.5E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSTVQINRSA ANSDVRFSKQ TTALAKPVIR ETPNPPRNPR IQPKLVRIIH ADADATDSSS  60
DDNEDSVVPT VKRRVREINL EVSSPSSASS SPPCSGRPKL SKRXKLQPKS GPDRRKGFVG  120
IRQRPWGKWA AEIRDPNQGK RLWLGTFDTA EEAAAAYDRA SLMLRGPRAV TNFPGAXETV  180
VADEVVAAAE XGHGEGGGAV AAVGGGEGAA DCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21116174463ATERF1
3gcc_A1e-21116174463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302320.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324270.0GU732427.1 Malus x domestica AP2 domain class transcription factor (AP2D3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358019.21e-150pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A498J0271e-145A0A498J027_MALDO; Uncharacterized protein
STRINGXP_008358019.11e-149(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2749723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.15e-23related to AP2 6l