PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000183226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 199aa MW: 22917.2 Da PI: 9.9553 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77 | 1.4e-24 | 68 | 118 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rien + rqvtf+kR +g++KK +ELSvLCda++ ++ifsstgk++ y+s MDP0000183226 68 SRIENRTTRQVTFAKRXAGLIKKTHELSVLCDAQIGLVIFSSTGKMFQYCS 118 59***********************************************96 PP | |||||||
2 | K-box | 46.8 | 1.3e-16 | 137 | 199 | 8 | 69 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 + +++++e+++ el+k+++e++ L+ ++ ++ GedL + +L +Le+qLe+s++++R++K MDP0000183226 137 RvPQHNDTEYMNAELRKMRRETQHLELSLQRYTGEDLRCVRFDDLVELEHQLEESVNRVRARK 199 44678899******************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.002 | 60 | 120 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-35 | 60 | 119 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.59E-36 | 61 | 135 | No hit | No description |
SuperFamily | SSF55455 | 1.1E-28 | 61 | 141 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-26 | 62 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-22 | 69 | 116 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-26 | 82 | 97 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-26 | 97 | 118 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.1E-13 | 140 | 199 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.767 | 144 | 199 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MSSLGFLENQ VPTSDHTSFV XCSTLSFKNF IXNLSTGGVR VPSISSSFSY KLKKKTYINM 60 GRGKITISRI ENRTTRQVTF AKRXAGLIKK THELSVLCDA QIGLVIFSST GKMFQYCSES 120 SSMEELIXRY QVTKGIRVPQ HNDTEYMNAE LRKMRRETQH LELSLQRYTG EDLRCVRFDD 180 LVELEHQLEE SVNRVRARK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-20 | 60 | 130 | 1 | 69 | MEF2C |
5f28_B | 4e-20 | 60 | 130 | 1 | 69 | MEF2C |
5f28_C | 4e-20 | 60 | 130 | 1 | 69 | MEF2C |
5f28_D | 4e-20 | 60 | 130 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028958765.1 | 2e-96 | MADS-box protein FBP24-like | ||||
Swissprot | Q9ATE5 | 2e-55 | FBP24_PETHY; MADS-box protein FBP24 | ||||
TrEMBL | A0A498JUU1 | 6e-95 | A0A498JUU1_MALDO; Uncharacterized protein | ||||
STRING | XP_008346100.1 | 3e-96 | (Malus domestica) | ||||
STRING | XP_008372113.1 | 2e-93 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4935 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.3 | 6e-49 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000183226 |
Publications ? help Back to Top | |||
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