PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000182154
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 474aa    MW: 51739.9 Da    PI: 6.4636
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000182154genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-32255309155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    +pr+rWtpeLHerF+eav++L G+ekAtPk +l++m+v+gLt++hvkSHLQkYRl
  MDP0000182154 255 RPRMRWTPELHERFIEAVKRLDGAEKATPKGVLKAMNVEGLTIYHVKSHLQKYRL 309
                    59****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.92252312IPR017930Myb domain
SuperFamilySSF466895.02E-17254309IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-30254310IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-24256310IPR006447Myb domain, plants
PfamPF002494.2E-9257308IPR001005SANT/Myb domain
PfamPF143792.4E-23346392IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MKVGXPSAIM SHHGVISVPQ SETTKGVTSS YCTSPSPIHD FLGSESEGRS FTASKCSSPR  60
VSPFKRAESL GXPTNMRGSP VQHSKSPFSR SSVFCTSLYQ SSSSSSETSR QLGKFPFLPH  120
PPTYGQSNSA VDSKSPLLFS EDTSNQYDDE QSEDLMKDFL NLHGDASHGS FHDISCGTDA  180
LALTEQLELQ FLSDQLDIAI TDNGENPGLD EIYEIPQASP NTAIGLTXSK GSCVTAPLVD  240
ALSSHPSPGP ASAHRPRMRW TPELHERFIE AVKRLDGAEK ATPKGVLKAM NVEGLTIYHV  300
KSHLQKYRLA RYMPEKKEDK KASNSEEKKA TSTINESDGR RKGSIPITEA LRLQMEVQKQ  360
LHEQLEVQRA LQLRIEDHAK YLQKILENQQ KAGSALLSPQ VLSSLTTNSI QVSEQQPSSS  420
SCVSPPQLAE SDSSSHLSLK HKATDCSDSE LSAGTKRPRL EEKPDEGAVE NPQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-25255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-25255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-25255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-25255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-25255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-25255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-25255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-25255312259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.119300.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008380429.20.0LOW QUALITY PROTEIN: myb family transcription factor PHL6
SwissprotQ949U21e-136PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A498J3030.0A0A498J303_MALDO; Uncharacterized protein
STRINGXP_009344989.10.0(Pyrus x bretschneideri)
STRINGXP_008380427.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134691925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-124G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]