PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000181937
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 161aa    MW: 18474.3 Da    PI: 8.0232
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000181937genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000227588114
                   EEETTTTEEESSHH CS
        zf-C2H2  1 ykCpdCgksFsrks 14
                   y+Cp C+ksF++ s
  MDP0000181937 75 YSCPVCSKSFRDMS 88
                   99********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5127017.877137IPR017921Zinc finger, CTCHY-type
SuperFamilySSF1612452.88E-7331No hitNo description
Gene3DG3DSA:3.30.40.105.7E-153597IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.42E-113688No hitNo description
PfamPF134456.3E-83878IPR027370RING-type zinc-finger, LisH dimerisation motif
SMARTSM001841.5E-63880IPR001841Zinc finger, RING-type
PROSITE profilePS5008911.7663881IPR001841Zinc finger, RING-type
CDDcd001621.70E-53884No hitNo description
PfamPF145996.0E-2686143No hitNo description
Gene3DG3DSA:2.20.28.101.4E-21109149IPR004039Rubredoxin-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MTTGGGENFF HCNKCGCCYS NALKDSHNCV EKAMHHNCPV CFEFLFDTRE DITVLRCGHT  60
IHLECVKEMQ RHFQYSCPVC SKSFRDMSRV WEKLDEEVAG TLMPLKYLNK MVWILCNDCG  120
EISEVNFHIV GHKCLKCKSY NTRRTRGGPA SCSSRITATM R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2k2d_A6e-1783147771RING finger and CHY zinc finger domain-containing protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.13914e-56root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, and anthers and stigma of open flowers. {ECO:0000269|PubMed:26508764}.
Functional Description ? help Back to Top
Source Description
UniProtPossesses E3 ubiquitin-protein ligase activity in vitro. Mediates mainly 'Lys-48'-linked polyubiquitination. Promotes abscisic acid (ABA)-induced stomatal closure, reactive oxygen species (ROS) production and drought tolerance (PubMed:26508764). Involved in the regulation of stomatal aperture (PubMed:25002225). {ECO:0000269|PubMed:25002225, ECO:0000269|PubMed:26508764}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during sucrose starvation. Repressed by sucrose (PubMed:17217462). Induced by cold, drought and salt stresses, and abscisic acid (ABA) (PubMed:26508764). {ECO:0000269|PubMed:17217462, ECO:0000269|PubMed:26508764}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028946598.11e-115E3 ubiquitin-protein ligase RZFP34-like
SwissprotQ9FFB62e-69ZFP34_ARATH; E3 ubiquitin-protein ligase RZFP34
TrEMBLA0A314Y5G73e-94A0A314Y5G7_PRUYE; E3 ubiquitin-protein ligase MIEL1
STRINGXP_008366754.11e-115(Malus domestica)
Publications ? help Back to Top
  1. Hsu KH, et al.
    Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.
    Plant Mol. Biol., 2014. 86(1-2): p. 125-37
    [PMID:25002225]
  2. Kunz S,Gardeström P,Pesquet E,Kleczkowski LA
    Hexokinase 1 is required for glucose-induced repression of bZIP63, At5g22920, and BT2 in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 525
    [PMID:26236323]
  3. Ding S,Zhang B,Qin F
    Arabidopsis RZFP34/CHYR1, a Ubiquitin E3 Ligase, Regulates Stomatal Movement and Drought Tolerance via SnRK2.6-Mediated Phosphorylation.
    Plant Cell, 2015. 27(11): p. 3228-44
    [PMID:26508764]