PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000181641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 397aa MW: 43688.2 Da PI: 7.2662 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.4 | 5.2e-08 | 141 | 161 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G+Ck Gd C FaHg MDP0000181641 141 ACPDFRK-GHCKKGDACEFAHG 161 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.08 | 88 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 136 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.788 | 137 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 140 | 163 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-6 | 141 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.615 | 171 | 195 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 13 | 171 | 194 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MMLGEPHRPN PTVHXPPWFL HDDSTAEVYS PFPLSGVSVS SDGNANGADF NGPYYLHEAL 60 TTLQRYLPSN EXDXDSDSDI SGRESDAPVD AYSCDHFRMF EFKVRRCARG RSHDWTECPY 120 AHPGEKARRR DPRKYHYSGT ACPDFRKGHC KKGDACEFAH GVFECWLHPS RYRTQPCKDG 180 TSCKRRVCFF AHTPEQLRVL PQQSPRGGGN SLNSAESYDG SPLRQAMEAA AASCVKTMPF 240 VSSPPQQSPE VSPPVSPMSR SLGSGSINEM VASLRNLQLG KVKSFPSSRN VQMGGSSGFG 300 SPVSPGFGSP RGSMLRPGFS SLPSTPTRVP PRSGISYLDF XEESCEEEPA MERVESGRGL 360 RAKMFEKLRE ENSLGRXDPG PNCSGAPDVX WVSELVQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.14667 | 0.0 | bud| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008337620.2 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | O82199 | 1e-136 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | A0A498HSZ2 | 0.0 | A0A498HSZ2_MALDO; Uncharacterized protein | ||||
STRING | XP_008337620.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-111 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000181641 |
Publications ? help Back to Top | |||
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