PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000181626
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 276aa    MW: 30792.1 Da    PI: 8.9274
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000181626genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer71.31.5e-221061357
    ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                   + +Y+eCl+NhAa lG++a+DGC Ef+ +   ++++ +++C A gCHRnFH r +
  MDP0000181626 10 NEVYRECLRNHAAILGSYATDGCDEFILD---HTSPGSIQCVAYGCHRNFHCRVT 61
                   678*************************8...6789***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.2E-181260IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.9151360IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.0E-171359IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-121357IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.15E-6113168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-14115168IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MKGDHDPNTN EVYRECLRNH AAILGSYATD GCDEFILDHT SPGSIQCVAY GCHRNFHCRV  60
TYAATSSQAA EDGRSGHHQN HVIMSCSGRX RDLAKNIITQ XQFIDYNVGE GGLXDSGERX  120
SSGKKQFRTK FTAEQKEKML AFAKXLGWKL LRKDLEDEIE RLCKSVGLCW YRSSSGXSWR  180
WSTRTTGLWA PPPAPITMLR FSATLIGSSS SLPFPSPCXA TPIXSSTLCL QRPTXVFLSS  240
VNLRSLTSHT LSNYCNSVQQ SLRVQKCQPX SNXRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.131050.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393463.12e-97zinc-finger homeodomain protein 9-like
TrEMBLA0A314UWY93e-67A0A314UWY9_PRUYE; Zinc-finger homeodomain protein 11
STRINGXP_008346636.11e-109(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.28e-23homeobox protein 31