PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000181259
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 666aa    MW: 73989.5 Da    PI: 8.0742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000181259genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06305327426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    +lC  f  +G C++G++C+F H+
  MDP0000181259 305 RLCFKFVSSGSCPRGESCNFQHD 327
                    566667778*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073804.77E-347226No hitNo description
PROSITE profilePS5010313.591301329IPR000571Zinc finger, CCCH-type
SMARTSM003560.0054303328IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4305327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-6305329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5305330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347333361IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4335360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-5338362IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4338362IPR000571Zinc finger, CCCH-type
PfamPF046772.2E-39378492IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541971.68E-7380482IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.109.8E-6384493IPR011146HIT-like domain
PfamPF046762.9E-10518584IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MAPPKILLSG DVSGNLKQLF KRVVSVNKSA AGPFDALLCV GQFFPDSADQ LDEFNDYIEG  60
RAQIPLPTYF IGDYGVGAAK VLLAATRDAG NQGFKLDGLK ICNSLYWLKG SGKFTLHGLS  120
VAYLSGQQSS DSQQFGTYNQ DDVDVLRAIA EEPGIIDFGI TNRANISDAP SGVSEPFGTD  180
NIVAELVAEI KPRYNIAGTK GVFYAREPYS NVDAVHVTRF LGLAPVGNKD KQKFIHALSP  240
TPASTMSAIE IRAKSTTTTL SPYTYEEKTA HSIEAGKRSS DSISDSQYWR YDVPQKRQKH  300
GDGNRLCFKF VSSGSCPRGE SCNFQHDVDA REQSLRGVCF DFMNKGKCER GPECKFKHSL  360
QDEGDSNSQP GRGSGNANRN RSTECWFCLS SPKVESHLII SIGEHYYCAL AKGPLVEDHV  420
LLIPIGHSPN TVSLPSECDI ELDKFQNALK KYYNKQGKEV VFFEWASKRT THANLQVVPV  480
PSAKAAALKN IFNLAAERQG FKFTTMKSSN NYDGRTLLGE QFDRNFSFFY VQLPDGTILS  540
HSIEENENFL PQFGRQVMAG LLKKADRDDW KNCTDSKEEE TKMVIFSVTL KWIATTFGRQ  600
LTADALKYFL NRTTCQWLXL SATSEIKRWP SKMRYSPYMR LLLGTMIGFM LTIEGAKGQS  660
QGPEKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028944444.10.0zinc finger CCCH domain-containing protein 64-like
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A498KF970.0A0A498KF97_MALDO; Uncharacterized protein
STRINGXP_008354434.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923