PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000181259 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 666aa MW: 73989.5 Da PI: 8.0742 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.6 | 1.6e-06 | 305 | 327 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC f +G C++G++C+F H+ MDP0000181259 305 RLCFKFVSSGSCPRGESCNFQHD 327 566667778*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd07380 | 4.77E-34 | 7 | 226 | No hit | No description |
PROSITE profile | PS50103 | 13.591 | 301 | 329 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0054 | 303 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-4 | 305 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-6 | 305 | 329 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 305 | 330 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.347 | 333 | 361 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-4 | 335 | 360 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-5 | 338 | 362 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 338 | 362 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF04677 | 2.2E-39 | 378 | 492 | IPR006768 | Cwf19-like, C-terminal domain-1 |
SuperFamily | SSF54197 | 1.68E-7 | 380 | 482 | IPR011146 | HIT-like domain |
Gene3D | G3DSA:3.30.428.10 | 9.8E-6 | 384 | 493 | IPR011146 | HIT-like domain |
Pfam | PF04676 | 2.9E-10 | 518 | 584 | IPR006767 | Cwf19-like protein, C-terminal domain-2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 666 aa Download sequence Send to blast |
MAPPKILLSG DVSGNLKQLF KRVVSVNKSA AGPFDALLCV GQFFPDSADQ LDEFNDYIEG 60 RAQIPLPTYF IGDYGVGAAK VLLAATRDAG NQGFKLDGLK ICNSLYWLKG SGKFTLHGLS 120 VAYLSGQQSS DSQQFGTYNQ DDVDVLRAIA EEPGIIDFGI TNRANISDAP SGVSEPFGTD 180 NIVAELVAEI KPRYNIAGTK GVFYAREPYS NVDAVHVTRF LGLAPVGNKD KQKFIHALSP 240 TPASTMSAIE IRAKSTTTTL SPYTYEEKTA HSIEAGKRSS DSISDSQYWR YDVPQKRQKH 300 GDGNRLCFKF VSSGSCPRGE SCNFQHDVDA REQSLRGVCF DFMNKGKCER GPECKFKHSL 360 QDEGDSNSQP GRGSGNANRN RSTECWFCLS SPKVESHLII SIGEHYYCAL AKGPLVEDHV 420 LLIPIGHSPN TVSLPSECDI ELDKFQNALK KYYNKQGKEV VFFEWASKRT THANLQVVPV 480 PSAKAAALKN IFNLAAERQG FKFTTMKSSN NYDGRTLLGE QFDRNFSFFY VQLPDGTILS 540 HSIEENENFL PQFGRQVMAG LLKKADRDDW KNCTDSKEEE TKMVIFSVTL KWIATTFGRQ 600 LTADALKYFL NRTTCQWLXL SATSEIKRWP SKMRYSPYMR LLLGTMIGFM LTIEGAKGQS 660 QGPEKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028944444.1 | 0.0 | zinc finger CCCH domain-containing protein 64-like | ||||
Swissprot | Q84WU9 | 0.0 | C3H64_ARATH; Zinc finger CCCH domain-containing protein 64 | ||||
TrEMBL | A0A498KF97 | 0.0 | A0A498KF97_MALDO; Uncharacterized protein | ||||
STRING | XP_008354434.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7132 | 19 | 23 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000181259 |