PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000180963 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 242aa MW: 27372.4 Da PI: 7.9323 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4e-19 | 91 | 145 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k MDP0000180963 91 RKKLRLTKEQSTLLEESFNRHSTLNPAQKQSLAEQLNLKPRQVEVWFQNRRARTK 145 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 117.6 | 6.8e-38 | 91 | 178 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq++lLEesF+++++L+p +K++la++L+l+prqv+vWFqnrRARtk+kq E d+e+Lk+++ +l en+rL++e +eL+ MDP0000180963 91 RKKLRLTKEQSTLLEESFNRHSTLNPAQKQSLAEQLNLKPRQVEVWFQNRRARTKLKQSEXDCEFLKKCCXSLXIENQRLKQELQELK 178 69*************************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-18 | 79 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.313 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-15 | 89 | 151 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.9E-16 | 91 | 145 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-18 | 91 | 145 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.30E-17 | 91 | 148 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.5E-13 | 147 | 192 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDDDEAACST ELQLGLGVCE YASRQEKKDN PLVCLDLLFA LCPKQEVPSS DDHIANGSGL 60 KTMDEDEDSY ERSTEHTNIK GVIMNNKNVV RKKLRLTKEQ STLLEESFNR HSTLNPAQKQ 120 SLAEQLNLKP RQVEVWFQNR RARTKLKQSE XDCEFLKKCC XSLXIENQRL KQELQELKSL 180 NGNGTSPLYI QIPKATMLTM CPSCEKMVKA RHNNQAAAKK AEDLNVVRKS SNKLQGGFDG 240 TI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 147 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009341742.1 | 1e-163 | PREDICTED: homeobox-leucine zipper protein HAT9-like | ||||
Swissprot | P46604 | 2e-50 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A498I5Q8 | 1e-176 | A0A498I5Q8_MALDO; Uncharacterized protein | ||||
STRING | XP_008390670.1 | 1e-177 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 7e-53 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000180963 |
Publications ? help Back to Top | |||
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