PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000180950
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 263aa    MW: 29568.1 Da    PI: 5.5237
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000180950genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-19125175255
            AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrd    + k +r++lg+f tae+Aa a+++a+++++g
  MDP0000180950 125 HYRGVRRRP-WGKYAAEIRDsT--R-KGARVWLGTFETAEDAALAYDKAALRIRG 175
                    8********.**********32..2.24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.79E-29124183No hitNo description
Gene3DG3DSA:3.30.730.104.8E-32124184IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-23125185IPR016177DNA-binding domain
PfamPF008471.8E-13125175IPR001471AP2/ERF domain
PROSITE profilePS5103223.63125183IPR001471AP2/ERF domain
SMARTSM003805.0E-37125189IPR001471AP2/ERF domain
PRINTSPR003675.8E-11126137IPR001471AP2/ERF domain
PRINTSPR003675.8E-11149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MTIHNDNPAE KPASEAIQLE DVWASFIGVN GVKKEVKSAT ESQSWEDMPP LDGREGSMEV  60
LQRLPSLGRW ISMGTEAWEK LLDSGAAPAQ NREQSCNDKL EGNGAANSEC EAKVERAKKV  120
EITKHYRGVR RRPWGKYAAE IRDSTRKGAR VWLGTFETAE DAALAYDKAA LRIRGSKAHL  180
NFPLETVARA MGLDCFSICS STNIGSNPRR RRLRDWEENI EERKPAVKRE ASMQKMLGDH  240
DEFDVFEFQD LGSDYLDSLL SSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-30124186163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-30124186466ATERF1
3gcc_A5e-30124186466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5065820.0KM506582.1 Eriobotrya japonica transcription factor ERF16 (ERF16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371435.10.0ethylene-responsive transcription factor ERF091
TrEMBLA0A0H3YCD21e-152A0A0H3YCD2_9ROSA; Transcription factor ERF16
STRINGXP_008371435.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.17e-34ERF family protein