PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000180409

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

SBP

Protein Properties

Length: 999aa MW: 110092 Da PI: 7.9207

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000180409	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.4	5.6e-40	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++ v ++ qrfCqqCsrfh l+efDe++rsCrrrLa+hn+rrrk+++ MDP0000180409 148 VCQVEDCKADLSNAKDYHRRHKVCDMHSKATKAPVGNVLQRFCQQCSRFHVLQEFDEGRRSCRRRLAGHNRRRRKTHP 225 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.2E-32	145	210	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.693	146	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.62E-37	147	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.0E-29	149	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.01E-7	715	885	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.48E-6	767	883	No hit	No description
Gene3D	G3DSA:1.25.40.20	8.1E-6	767	877	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence Send to blast
MEAFGAGSRK FSSPTVSDLK AVGKKSVEWD LNDWKWDGDL FTASPLNAAP SDCRSRQLFP 60 LGPPETPSTA GLSNTSSSGS DDICPGNEKG KRELEKRRRD SIVENVDLNN EVGSLNLKLG 120 EQAYPIMEGE VQTGKKTKIV GTTLNRAVCQ VEDCKADLSN AKDYHRRHKV CDMHSKATKA 180 PVGNVLQRFC QQCSRFHVLQ EFDEGRRSCR RRLAGHNRRR RKTHPDTVVN EGSLNDERGS 240 SYLLISLLRI LSNMHSNSSD QTKDQDLLSH LLKNLANLSG TVDGRNMSAL LTASQGLLNG 300 GASIQTAQKV LDTVSNGCEP SKPSVSASKM DDYGNREDPS RPTQQCSTVP ASDFRIISSV 360 DADHGGLQVV SGVNATKPFP SRDRVPSTSV APEATTGRIQ LNGIDLNNTY DDSQDYLASL 420 GNSQAPVNSG TVSHGFPLRM RQDLQKSSPP QTSGTSYSTS SSSSGEVQSR TDRIVFKLFG 480 KDPNDLPFVL RSQILDWLSH SPTDIESYIR PGCIILTVYL RLEKSTWEEL CCNLGSILKR 540 LLHAANDPFW TTGWVYTRVQ HFVAFTYNGH VVLDTPLPLK SNKNCRISCI KPIAVSLSQR 600 ADFAVKGFNL SHATTRITGK ILSPSSSQVA LCSGREVEDH GLSSSFFPFI VAEQEVCSEI 660 CMLEGAIEGA ETADDIQAEP EKLEAKNQAM DFINELGWLL HRGHTKFRLG HMDPKLDLFP 720 FRRFRLLLEF SMDHDWCAVV KKLLGILLEG TVDAGEHPSI ELALLDMSLL HRAVRRKCRP 780 MVELLLSFVL DKGLGKTGSE DGQQVGGDGN KFLFKPDAVG LMGLTPLHVA ASTDGCENIL 840 DALTDDPGMV GIKAWGNARD STGLTPNDYA CLRSCYTYIQ IVQRKISKKH ESRHVVLDIP 900 GVILDSSSKK KQLDRHRSSK VSSLETERID MKAMQAHCKL CEMKLAYGNT RSLVYRPAML 960 SMVAIAAVCV CAALLFKSSP EVLYIFQPFT WERLKYGTS

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence Send to blast

MEAFGAGSRK FSSPTVSDLK AVGKKSVEWD LNDWKWDGDL FTASPLNAAP SDCRSRQLFP  60
LGPPETPSTA GLSNTSSSGS DDICPGNEKG KRELEKRRRD SIVENVDLNN EVGSLNLKLG  120
EQAYPIMEGE VQTGKKTKIV GTTLNRAVCQ VEDCKADLSN AKDYHRRHKV CDMHSKATKA  180
PVGNVLQRFC QQCSRFHVLQ EFDEGRRSCR RRLAGHNRRR RKTHPDTVVN EGSLNDERGS  240
SYLLISLLRI LSNMHSNSSD QTKDQDLLSH LLKNLANLSG TVDGRNMSAL LTASQGLLNG  300
GASIQTAQKV LDTVSNGCEP SKPSVSASKM DDYGNREDPS RPTQQCSTVP ASDFRIISSV  360
DADHGGLQVV SGVNATKPFP SRDRVPSTSV APEATTGRIQ LNGIDLNNTY DDSQDYLASL  420
GNSQAPVNSG TVSHGFPLRM RQDLQKSSPP QTSGTSYSTS SSSSGEVQSR TDRIVFKLFG  480
KDPNDLPFVL RSQILDWLSH SPTDIESYIR PGCIILTVYL RLEKSTWEEL CCNLGSILKR  540
LLHAANDPFW TTGWVYTRVQ HFVAFTYNGH VVLDTPLPLK SNKNCRISCI KPIAVSLSQR  600
ADFAVKGFNL SHATTRITGK ILSPSSSQVA LCSGREVEDH GLSSSFFPFI VAEQEVCSEI  660
CMLEGAIEGA ETADDIQAEP EKLEAKNQAM DFINELGWLL HRGHTKFRLG HMDPKLDLFP  720
FRRFRLLLEF SMDHDWCAVV KKLLGILLEG TVDAGEHPSI ELALLDMSLL HRAVRRKCRP  780
MVELLLSFVL DKGLGKTGSE DGQQVGGDGN KFLFKPDAVG LMGLTPLHVA ASTDGCENIL  840
DALTDDPGMV GIKAWGNARD STGLTPNDYA CLRSCYTYIQ IVQRKISKKH ESRHVVLDIP  900
GVILDSSSKK KQLDRHRSSK VSSLETERID MKAMQAHCKL CEMKLAYGNT RSLVYRPAML  960
SMVAIAAVCV CAALLFKSSP EVLYIFQPFT WERLKYGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-28	148	222	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.2877	1e-146	bud\| fruit\| leaf\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008390495.1	0.0	squamosa promoter-binding-like protein 1
TrEMBL	A0A498HJS4	0.0	A0A498HJS4_MALDO; Uncharacterized protein
STRING	XP_008390495.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Phytozome	MDP0000180409