PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000180408
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 930aa    MW: 103391 Da    PI: 6.297
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000180408genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.1e-41147224178
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++
  MDP0000180408 147 VCQVEDCKADLSNAKDYHRRHKVCDMHSKATKALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNRRRRKTNP 224
                    6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.2E-33142209IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.206145222IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-38146227IPR004333Transcription factor, SBP-box
PfamPF031101.7E-29148221IPR004333Transcription factor, SBP-box
SuperFamilySSF484033.8E-9689812IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.9E-7704812IPR020683Ankyrin repeat-containing domain
CDDcd002042.48E-9705812No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MESEFGGKGR NFRGVKVPDL TGVGTRSMEW DLNGWKWDGD LFTASPLNST PSDGRSRQFF  60
PVRPETLSDA GLSNSSSGSD NISPGNEKGT RELEKRRRDV FVENGELNDE AASLNLKLGG  120
QTYPIMEEEV QTGKKKKIIG TTSNRAVCQV EDCKADLSNA KDYHRRHKVC DMHSKATKAL  180
VGNVMQRFCQ QCSRFHALQE FDEGKRSCRR RLAGHNRRRR KTNPDTAVNG GYLNNEGGSS  240
YLLISLLRIL SNMHSSSSDQ TKDQDVVSHL LRSLANVAGT ADGRNISKLL QGSQGLFNSG  300
TSVQTARKVL DVDDGVNPED PLRPKGHCSI LPASRDSSES KSVTPEPTSR RFQLNDIDLN  360
STYDDSQDFV ENLGNSHVPA SPGTASLGFP SWMQPDSHKS SPPQTSGNSD LTSTQSPSSS  420
SGEAQSRTDR IVFKLFGKDP SELPFALRSQ ILDWLSQSPT NIESYIRPGC IILTIYLRLE  480
KSTWEEFCCH LGSSLKTLLD AVDDPFWRTG WVYTRILSLD RLLCALEGKY LVQETCYDLM  540
DDVDSSVEDD EQQCLRFSCS IPNITGRGFI EVEDHGLSSS FFPFIVAEQE VCSEICMLED  600
VIEAAETDDD IQSGPEKVEA KNQALDFIHE LGWLLHRSRV KFRLGQLDPS LDLFPFGRFR  660
LLMEFSIDHD WCAVVKKLLG ILFDGTVDAG KHPSVESALL DMGLLHRAVR GNGRRMVEFL  720
LRFVPGLTGS EQNKQVDKDG NSFLFKPDVV GPMGLTPLHI AASTDGCEQV LDALTDDPGK  780
VGIKAWKNAR DSTGLTPYDY ACLRSHYSYV QIVQRKISKT LESGHVVLDI PGLTFDRNGK  840
QKQSDADKSS RVASLETEKN EIKAILRHCR LCEQKPAYST TRSLVYRPAM LSMVIVAAVC  900
VCVALLFKST PEVLFVFEPF RWEHLKFGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-301472211084squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.88670.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008390494.20.0LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A498HJS40.0A0A498HJS4_MALDO; Uncharacterized protein
STRINGXP_008390494.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]