PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000179986 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | G2-like | ||||||||
Protein Properties | Length: 204aa MW: 23598.8 Da PI: 7.2718 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.7 | 7.4e-30 | 40 | 94 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt++LHe+Fve+v+ LGG+ kA Pk+il+lm+v+gLt+ hvkSHLQk+R MDP0000179986 40 KTRIQWTQDLHEKFVECVNYLGGAYKAPPKSILKLMNVDGLTIFHVKSHLQKFRN 94 68****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.164 | 37 | 97 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.09E-17 | 38 | 94 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-21 | 40 | 94 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 7.3E-26 | 40 | 94 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-6 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.1E-16 | 125 | 171 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MNEQKIDCQE RIQQSHDYIS KFVSTSYGYS XSTRHXLLSK TRIQWTQDLH EKFVECVNYL 60 GGAYKAPPKS ILKLMNVDGL TIFHVKSHLQ KFRNSEYPPG SAKGKXEKRT TSNVEPQLDV 120 ETXLHIKKAI QLELDVQQHL HEQLEIQRNL QLRIEEQGKQ LKNIIELQLK TIIDLQLKNS 180 DTTFYEGAPL SSLDDEFIGL SINT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-20 | 40 | 97 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-20 | 40 | 97 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-20 | 40 | 97 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-20 | 40 | 97 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-20 | 40 | 97 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-20 | 40 | 97 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-20 | 40 | 97 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-20 | 40 | 97 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009370155.1 | 1e-100 | PREDICTED: myb family transcription factor PHL5-like | ||||
Swissprot | Q0WVU3 | 5e-58 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A498IIX6 | 1e-112 | A0A498IIX6_MALDO; Uncharacterized protein | ||||
STRING | XP_009370155.1 | 2e-99 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3740 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 2e-60 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000179986 |