PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000179719
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 572aa    MW: 62538.8 Da    PI: 5.2327
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000179719genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-29281339259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dg++WrKYGqK  kg+++pr+YYrCt   gCpv+k+v+r++ed +++++tYeg+Hnh+
  MDP0000179719 281 NDGCSWRKYGQKISKGNPCPRAYYRCTVVaGCPVRKQVQRCQEDMSILITTYEGTHNHP 339
                    8**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-32265341IPR003657WRKY domain
SuperFamilySSF1182901.03E-26273341IPR003657WRKY domain
PROSITE profilePS5081129.31275341IPR003657WRKY domain
SMARTSM007741.5E-35280340IPR003657WRKY domain
PfamPF031066.1E-26281339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MGNGDKEKDL DVDLSLKIDA KEEKQEEGVG GEEEKEEEDA HRVNDGVEST AAEEKEDEQQ  60
PGVQNKRRKT TETGAGEVED DDVSVVETSV QENNMKTDQE VQLSVLQMEM SRMKEENEVL  120
RKVVEQTMKD YNDLQMKFTV LHQSCQNKDP QTFLSLAGND PNAVQGPRKI TKMSDIRHRS  180
PLLPKRDDES QLGLSLRLTS SATTASQLRG REEGEEDDDD KEEINNKEGL TRTTSLTSSS  240
VQLQNKLQRP ELAGTPSHGG SQPNRKARVS VRSRCESAAI NDGCSWRKYG QKISKGNPCP  300
RAYYRCTVVA GCPVRKQVQR CQEDMSILIT TYEGTHNHPL PVGATAMGAT AMASTAAAAA  360
SFMLLDSSNL HLADGTPSTY TQASLPYHHM MNMNPSSHSS SNLRSVDPHD PSKGLVLDLT  420
NNFYDTMGGS SSSIPPGFST NWLMSSTSSR SANYPSSTSL TNRLLDNGSR STRVALGDDQ  480
KGNWRSGEEN MSMAENVSAI ASDPKFRVAV AAAITSLINK DNHTTTSHPA PNAIAPRDHG  540
DNNGSSSTSN LWAIDEHFLS SNGKLIRKNT SE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20267343176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365288.10.0probable WRKY transcription factor 9 isoform X1
TrEMBLA0A498JG430.0A0A498JG43_MALDO; Uncharacterized protein
STRINGXP_008365288.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.15e-49WRKY DNA-binding protein 9