PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000179718 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 171aa MW: 20474.3 Da PI: 9.471 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.7 | 1.3e-17 | 9 | 41 | 1 | 33 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCda 33 +rien + rqvtf+kRr+g++KK +ELSvLCda MDP0000179718 9 SRIENRTTRQVTFAKRRAGLIKKTHELSVLCDA 41 59******************************7 PP | |||||||
2 | K-box | 59.8 | 1.1e-20 | 84 | 168 | 10 | 94 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 +++++e+++ el+k+++e++ L+ ++ ++ GedL + +L +Le+qLe+s++++R++K e+l +q+++l k+l+een++L MDP0000179718 84 QHNDTEYMNAELRKMRRETQHLELSLQRYTGEDLRCVRFDDLVELEHQLEESVNRVRARKFEVLQQQTDNLLATTKRLEEENEQL 168 57889******************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 5.36E-18 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.9E-19 | 1 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.469 | 1 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-15 | 10 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.0E-19 | 84 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.274 | 88 | 171 | IPR002487 | Transcription factor, K-box |
Gene3D | G3DSA:1.20.120.160 | 2.7E-4 | 118 | 167 | IPR008207 | Signal transduction histidine kinase, phosphotransfer (Hpt) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004871 | Molecular Function | signal transducer activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MGRGKITISR IENRTTRQVT FAKRRAGLIK KTHELSVLCD APDRPCHFLK HWQDVSVLHR 60 SYFDFWHGGA YSKIPGYKRI RVPQHNDTEY MNAELRKMRR ETQHLELSLQ RYTGEDLRCV 120 RFDDLVELEH QLEESVNRVR ARKFEVLQQQ TDNLLATTKR LEEENEQLFH L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028958765.1 | 9e-84 | MADS-box protein FBP24-like | ||||
TrEMBL | A0A498JUU1 | 3e-82 | A0A498JUU1_MALDO; Uncharacterized protein | ||||
STRING | XP_008346100.1 | 6e-85 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4935 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 1e-33 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000179718 |