PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000178782 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 361aa MW: 40816.1 Da PI: 4.3345 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 8e-12 | 195 | 238 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L MDP0000178782 195 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 238 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 189 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-15 | 193 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 195 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-11 | 195 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.13E-5 | 196 | 242 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.5E-15 | 196 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 6.56E-4 | 287 | 328 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MELNEHSFLE ELLALRRDSR SSSTWETNIP TEMNDLLSSS GSWGNFDYFD QQXPSSSFFP 60 NSSSIHEFSP PFEPNFNNFN ATFNQEVYYP FGFGVTDEAL LSAQQQVTDS SYSTLDTPPF 120 LVXEDNPWSM LEEEELGLLG DEIHNLETQA EAAAACKVEP TQSPDQVPSF NVGICVERNT 180 RATNKKLQGQ PSKNLMAERR RRKRLNDRLS MLRSIVPKIS KMDRTSILGD TIDYMKELLE 240 RINNLQQEIE ADSDQLNVMS LFKDIKPNEM LVRNSPKFDV QRRNVDTKID ICCAGKPGLL 300 LSTVSTLEAL GLEIQQCVIS CFNDFAVQAS CSEDSDQRTL VTSEDIKQEL FRNAGYGGRC 360 V |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 204 | ERRRRKRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11652 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008357567.2 | 0.0 | transcription factor bHLH61-like | ||||
Swissprot | Q9LSL1 | 7e-87 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A498JFD7 | 0.0 | A0A498JFD7_MALDO; Uncharacterized protein | ||||
STRING | XP_008347807.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008357567.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 3e-89 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000178782 |
Publications ? help Back to Top | |||
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