PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000178517
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 544aa    MW: 58534.8 Da    PI: 7.7975
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000178517genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345.1e-11153177327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++ C+++ rtG C++G++C+F+H+p
  MDP0000178517 153 EPDCSYYIRTGLCRFGATCRFNHPP 177
                    789********************97 PP
2zf-CCCH23.88e-082092231327
                    S--TTTTT-SS-SSS CS
        zf-CCCH  13 GtCkyGdrCkFaHgp 27 
                    GtCk+G++CkF+H++
  MDP0000178517 209 GTCKFGATCKFHHPR 223
                    9************96 PP
3zf-CCCH37.63.8e-12246270327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    +++C +++rtG+Ck+G++CkF+H++
  MDP0000178517 246 EVECAYYLRTGQCKFGSTCKFHHPQ 270
                    689********************97 PP
4zf-CCCH35.91.2e-11405431127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C+f+++tG Ck+G+ C+F+H++
  MDP0000178517 405 PGQPECQFYMKTGDCKFGGVCRFHHPR 431
                    5789*********************96 PP
5zf-CCCH40.45e-13451477127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++lC f++r+G+Ck+G++CkF+H++
  MDP0000178517 451 PGEPLCIFYSRYGICKFGPSCKFNHPM 477
                    589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.957150178IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4150177IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7153177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5155178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.108195224IPR000571Zinc finger, CCCH-type
SMARTSM003560.96198223IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-5209223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.206243271IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5243270IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10246270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6247271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4249269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155404432IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5404431IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-8406431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5408434IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4410432IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727450478IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7450477IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10452477IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5453477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4455475IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MASWLSSDRL SLRVTPAKLS RPSDSCMEAV RVSGIRFGGS AYSQLREWNL LAAEADNVSN  60
ENWMRXLTSS KXAKAXGNGG GGGAADDDLT YCLSLTGDGA MDFDAGIPMS RAAAPVTDAR  120
SLSASLTQDA MWQMNMRSSE TMEAGPYPER AGEPDCSYYI RTGLCRFGAT CRFNHPPNRK  180
LAIAAARMKG EFPERIGQPE CQACISVEGT CKFGATCKFH HPRDKAGIAG XVALNILGYP  240
LRPQNEVECA YYLRTGQCKF GSTCKFHHPQ PTNMMVSVGG STVYPTVQSP TTPGQQSYAG  300
GITNWSRASF IPSPRWQAQS SYTPLIVPQG VVSVPGWNAY SGQLGSVSSP EGQQQTAGNS  360
QMYGTSQQGE PENSGSQGGF SPYGSGSIPV GFYALQRENV FPERPGQPEC QFYMKTGDCK  420
FGGVCRFHHP RERLIPAPDC VLSPMGLPLR PGEPLCIFYS RYGICKFGPS CKFNHPMGIF  480
TYNLSASSSA DAPARRLMGS TSGAASLNLS SEGLVEAGSA KPRRLSLSEP RQMPSAEDNI  540
DTEE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.239660.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008355849.20.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A498K5000.0A0A498K500_MALDO; Uncharacterized protein
STRINGXP_008355849.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-180zinc finger protein 1