PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000178451
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 1396aa    MW: 158053 Da    PI: 4.6212
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000178451genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.7e-1013191372146
                       TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding    1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqk 46  
                       r+ WT eE+e+l+++v+ +++     +Wk+I +       k Rt+++++++w k
    MDP0000178451 1319 RLYWTREEEEKLKELVNSFPTTgkyrCWKKILENGRdvfhKDRTPNDLRNKWGK 1372
                       788*************************************************66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.850.103.8E-10112353IPR001752Kinesin motor domain
SMARTSM001293.6E-11313356IPR001752Kinesin motor domain
SuperFamilySSF525402.88E-9213351IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd013743.65E-14415348No hitNo description
PROSITE profilePS50067100.25415348IPR001752Kinesin motor domain
PfamPF002251.1E-8822348IPR001752Kinesin motor domain
PRINTSPR003801.8E-3591112IPR001752Kinesin motor domain
PRINTSPR003801.8E-35201218IPR001752Kinesin motor domain
PROSITE patternPS004110234245IPR019821Kinesin motor domain, conserved site
PRINTSPR003801.8E-35235253IPR001752Kinesin motor domain
PRINTSPR003801.8E-35298319IPR001752Kinesin motor domain
SuperFamilySSF579035.98E-5786843IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.9E-5798845IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500907.80513141374IPR017877Myb-like domain
SuperFamilySSF466891.12E-613161375IPR009057Homeodomain-like
SMARTSM007171.4E-513181376IPR001005SANT/Myb domain
PfamPF002498.2E-813201372IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-813211372IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007018Biological Processmicrotubule-based movement
GO:0003677Molecular FunctionDNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
Sequence ? help Back to Top
Protein Sequence    Length: 1396 aa     Download sequence    Send to blast
MASRTPGTPR AKKEKIVVLV CLRPLSKREE LAKEQVSWDC LGDNTIVYKP PPHERSAQST  60
SFTFDKVFGP GSTEAVYEEG VRNVALSSLM GINATIFAYG QSGSGKTYTM RRIMEKAVDD  120
IYNHMIKTPE REFAIKISGL EIYNENVRDL LNTESVGNLK LLDDPEKGIV VEKLVEEAAS  180
SHQHLRSLIG ICEAQREVGE TALNENSSRS HQIIRLTIES TVRESLDCRT SFVASLNFVD  240
LAGSERAPDT HADGVRLREG CHINLSLMTL TNVIRKLSQF GCSLFDLIIS AGKLSGPIPY  300
RDSKLTRILQ HSLGGNARTA IICTLSPALS HAEQSRNTLF FATQAKEVVS DKQLVKHLQK  360
QVAKLEAELY TLYPLREXIQ QMEMEMEDXR XERXXAXXQA DELRHKLEVX VVSDKXLVKR  420
LQMEVLRRET EVPTVSREED LRIQKVLNQL ELPHPYVKKL IFCIGVLPAT FYAEELGGGD  480
RARNTMIXHS MRLSSFAPFT LNHEILRLEV LLVQLGEGPS RALEIXXQKE VLENHDRARN  540
TMIRHPMRLS SFAPFMLNRE ILKLEVLLAQ LGEGPSRALE IVLQKEVAWQ GLENQDAGET  600
FCNLQAEIKE THYTSSRPKE FEVGSLVPVN KXEIPRLHSQ GSAIANLEEQ FPKVQYFTDK  660
LVSLPCIQLL XLRFLEDLFR PREVTGDVLE QIKNEPVKHN IVPLLGCWQE DEAEVDGXFH  720
LEPGTSNAAX PDVSXVEYDH ISEHVFHVKV EHPADRXEKK AISDEAKELM DCHRETSDSX  780
AFRNGKIDVS ENRDFLGFLC SNGGQXLICN TSNCPXVFHQ NFLDSDLICY KKGKYYCPIC  840
SXSLAYENRL GEIEEKLRRK AVAFDEVFSG CTDGCTXNEQ XNARNENGYX CDXQFDDAQV  900
HNQFVGVEDN EIKEGTEFEV EDENNGGNSV SCRGEGTNEI IRGGSGHPCV SELLELQQDE  960
ETAVEENSGE NEEDEGGKRV FVEKEDEIEN AELMQPESME LPSNTIVLSD TESPLVHKRR  1020
EDNEIKEGMK FEVEDENNDG DSVSCRGEGT NEVIRGDSEH PCLSELLELQ QDEETAVEEN  1080
SDKNEEDEGG KKVFAEKEDE IENAELMQPE SMEVPLNTIV LSDTESPVVH KRREDNEIKE  1140
GMKFEVEDEN NDSDNVSCRG EGTNEVIRGD SEHPCVSELL ELQQDEETAV EENSDKNEED  1200
EGGKRVFAET ENEIKNAELM QPESLEMPSN TIVLSDTESP VVHKNHEKAP KSFTIVLSDS  1260
SESDASDTWS PSMEPEVSDT RPPLLGEIQP KHKGQKTREF GNQPTSSNLP LPRXRRRMRL  1320
YWTREEEEKL KELVNSFPTT GKYRCWKKIL ENGRDVFHKD RTPNDLRNKW GKMRVKGAVD  1380
HFLTLRENIC SIRKMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1t5c_A7e-70113461326Centromeric protein E
1t5c_B7e-70113461326Centromeric protein E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950255.10.0uncharacterized protein LOC103431402
TrEMBLA0A498HN640.0A0A498HN64_MALDO; Kinesin-like protein
STRINGXP_009365403.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2282324