PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000177089 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 209aa MW: 23220 Da PI: 8.6516 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00026 | 32 | 52 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C C+++F + L +Hi +H MDP0000177089 32 CRLCDRVFMSTQALISHIDSH 52 ******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.93 | 30 | 57 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MSRYNWNLRQ GNMLGSSDPA PPRATDLTQI ACRLCDRVFM STQALISHID SHMGDGDRTT 60 GRLRQLNNLP NNINAFISSN APTRPVPIFP LTNPFHQRSL FHGANNQIGF TTPPLPPPQP 120 HYQLPCAQQP QVPHYSLPRN PNVNSGAAAS HXMMMPYGNQ MAHVVREENY SDCTRPFLSQ 180 LERPIPSINF GLDASGNAKS DHLDLALKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021804636.1 | 4e-39 | uncharacterized protein LOC110748960 | ||||
TrEMBL | A0A498HNU3 | 1e-150 | A0A498HNU3_MALDO; Uncharacterized protein | ||||
STRING | EMJ25623 | 3e-42 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14890 | 8 | 12 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000177089 |