PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000177010
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 257aa    MW: 29425.7 Da    PI: 8.449
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000177010genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89e-171057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv+ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
    MDP0000177010 10 KGPWTEQEDFQLVCFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                     79********************************************97 PP
2Myb_DNA-binding54.62.5e-1763108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
    MDP0000177010  63 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.706557IPR017930Myb domain
SuperFamilySSF466893.03E-298104IPR009057Homeodomain-like
SMARTSM007174.8E-15959IPR001005SANT/Myb domain
PfamPF002491.7E-151057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-201164IPR009057Homeodomain-like
CDDcd001673.37E-101257No hitNo description
PROSITE profilePS5129427.83558112IPR017930Myb domain
SMARTSM007177.6E-1762110IPR001005SANT/Myb domain
PfamPF002491.0E-1563107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2465111IPR009057Homeodomain-like
CDDcd001672.07E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVQDQEQIRK GPWTEQEDFQ LVCFVGLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPD  60
LKRGKMTPQE ERLVLELHSK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQEKKRAMS  120
PSSSSSNCSS SSNITTTEGG ESFYDTGGKK PKASSGGKKT GGGDEVKEDE KREQREYSLD  180
DIWKDINLPE VSSIVPVYDG NLSSCPLMAS PTPWEYXSDS LWKMDLEEES KNMFLPTPSG  240
DHQFLSCYEY GKASLTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-28101124105MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-28711255159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-28711255159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-28101124105C-Myb DNA-Binding Domain
1msf_C2e-28101124105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155162GGKKTGGG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385168.20.0transcription factor MYB59-like isoform X1
SwissprotQ9LX826e-87MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A498ILR70.0A0A498ILR7_MALDO; Uncharacterized protein
STRINGXP_008385168.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.14e-81myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]