PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000176924 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 313aa MW: 32888.6 Da PI: 9.3713 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.7 | 1.8e-07 | 116 | 141 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k ++C+ + Ck+Gd+C+FaHg+ MDP0000176924 116 KSRICNKYNSAEGCKFGDKCHFAHGE 141 5689999999999***********96 PP | |||||||
2 | zf-CCCH | 36.4 | 8.6e-12 | 280 | 304 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++f + GtC +G+rC+FaHg MDP0000176924 280 YKTKLCDNFTK-GTCTFGERCHFAHG 304 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.272 | 35 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 40 | 35 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-13 | 111 | 146 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 114 | 142 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-7 | 115 | 145 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-5 | 116 | 141 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.016 | 116 | 141 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 9.35E-16 | 175 | 253 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.0E-12 | 182 | 252 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 1.3E-17 | 182 | 253 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.718 | 183 | 247 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 3.4E-12 | 185 | 249 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.82E-15 | 185 | 247 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-17 | 275 | 310 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-9 | 278 | 309 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.511 | 279 | 306 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-8 | 279 | 305 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-9 | 280 | 304 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MDTRKRGRHE GGGFHSNGGF KKNKQELESF STGVGSKSKP CTKFFRFKSF SSKELHDSDC 60 STAGCPFGES CHFLHYVPGG YNAVAQMMNL APAPXPPRNI SGPPSNSNGS NSSGVKSRIC 120 NKYNSAEGCK FGDKCHFAHG EWELGKPLAQ THDDPRAMGP GPGRMGNWME PHAARPASSF 180 GASSTAKISV DASLAGAIIG KGGVHSKQIC RQTGAKLSIR DHESNPNLRN IELEGTFEQI 240 QQASAMVSEL IATVSISGPG KAPGGGGGGP GAPAPPGSNY KTKLCDNFTK GTCTFGERCH 300 FAHGAAELRK SGV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11322 | 1e-114 | bud| leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008367363.2 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-104 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A498I3E1 | 0.0 | A0A498I3E1_MALDO; Uncharacterized protein | ||||
STRING | XP_008367363.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-60 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000176924 |