PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000176924
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 313aa    MW: 32888.6 Da    PI: 9.3713
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000176924genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-07116141227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    k ++C+ +     Ck+Gd+C+FaHg+
  MDP0000176924 116 KSRICNKYNSAEGCKFGDKCHFAHGE 141
                    5689999999999***********96 PP

2zf-CCCH36.48.6e-12280304126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ykt+lC++f + GtC +G+rC+FaHg
  MDP0000176924 280 YKTKLCDNFTK-GTCTFGERCHFAHG 304
                    9**********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.2723578IPR000571Zinc finger, CCCH-type
SMARTSM00356403577IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-13111146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028114142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-7115145IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-5116141IPR000571Zinc finger, CCCH-type
SMARTSM003560.016116141IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.35E-16175253IPR004088K Homology domain, type 1
SMARTSM003221.0E-12182252IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.3E-17182253IPR004088K Homology domain, type 1
PROSITE profilePS5008414.718183247IPR004088K Homology domain, type 1
PfamPF000133.4E-12185249IPR004088K Homology domain, type 1
CDDcd001051.82E-15185247No hitNo description
Gene3DG3DSA:4.10.1000.107.4E-17275310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-9278309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.511279306IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-8279305IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9280304IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDTRKRGRHE GGGFHSNGGF KKNKQELESF STGVGSKSKP CTKFFRFKSF SSKELHDSDC  60
STAGCPFGES CHFLHYVPGG YNAVAQMMNL APAPXPPRNI SGPPSNSNGS NSSGVKSRIC  120
NKYNSAEGCK FGDKCHFAHG EWELGKPLAQ THDDPRAMGP GPGRMGNWME PHAARPASSF  180
GASSTAKISV DASLAGAIIG KGGVHSKQIC RQTGAKLSIR DHESNPNLRN IELEGTFEQI  240
QQASAMVSEL IATVSISGPG KAPGGGGGGP GAPAPPGSNY KTKLCDNFTK GTCTFGERCH  300
FAHGAAELRK SGV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.113221e-114bud| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008367363.20.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-104C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A498I3E10.0A0A498I3E1_MALDO; Uncharacterized protein
STRINGXP_008367363.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-60C3H family protein