PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000176265
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 309aa    MW: 34889.5 Da    PI: 9.5557
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000176265genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.6e-4041117278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    C v+gC++dls++++yhrrhkvCe hsk+++v+++g+e+rfCqqCsrfh+l efDe+krsCrrrL++hn+rrrk+q+
  MDP0000176265  41 CLVDGCNSDLSKCRDYHRRHKVCELHSKTSKVTIKGQERRFCQQCSRFHSLVEFDEGKRSCRRRLDGHNKRRRKPQS 117
                    **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.4E-3234102IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.69338115IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.93E-3839120IPR004333Transcription factor, SBP-box
PfamPF031101.3E-2941114IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEDGSKGKLK DPGISMRKPS SSTTSLKRPR QPNNETKIAA CLVDGCNSDL SKCRDYHRRH  60
KVCELHSKTS KVTIKGQERR FCQQCSRFHS LVEFDEGKRS CRRRLDGHNK RRRKPQSESM  120
PTNLGRFLSN YQGTRFLSFG NPQMCAAKNT HLWGCALKPE NDXVLLDNHS QLNETRRSSY  180
AYREKQIPFM QGFEYAHSEA AVYQPFXNTN FAPGNSSNSH RMFANGLYGD IESNRALSLL  240
SWTRATQEEI GLSNTAQSSS VCPAQSMIPR IHYNNLGVQD EAAISNLVSD GNSIGNLHCQ  300
GKFQNSDYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-28411141184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197114KRSCRRRLDGHNKRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008340238.20.0teosinte glume architecture 1-like
TrEMBLA0A498HJD10.0A0A498HJD1_MALDO; Uncharacterized protein
STRINGXP_008340238.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-45SBP family protein