PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000176224 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 320aa MW: 35405.3 Da PI: 9.5052 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.6 | 7.7e-11 | 192 | 213 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vk++++pr MDP0000176224 192 LDDGYKWRKYGQKVVKNTQHPR 213 59*******************9 PP | |||||||
2 | WRKY | 55.7 | 9.5e-18 | 261 | 299 | 21 | 59 |
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 rsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ MDP0000176224 261 DRSYYRCTMDNCRVKKRVERLAEDPRMVITTYEGRHVHS 299 59************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.8E-31 | 177 | 212 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-9 | 185 | 214 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.771 | 187 | 301 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.3E-32 | 192 | 300 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-7 | 193 | 214 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-12 | 261 | 298 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.18E-13 | 261 | 300 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.8E-31 | 262 | 299 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MASRTSXAAI LNHHHHQQPL GLFENQEGEG CNTQTDFFPF PQNLTFSSLP LVGHQSLKGG 60 LSTASIASDD APSTTTLSET LVPRPSLTPP LRHKQDHNIT TSSEFGGGGG GGGGGPHGHL 120 LSLQRSTANL WAWGDVSDEY CLSSKRSSGG DDSHHPYLGG LSAMKMKKMK AIRRKVREPR 180 FCFKTLSDVD VLDDGYKWRK YGQKVVKNTQ HPRLLQARLG AGDLMATRVI AHCSPHAGGK 240 RNIESTSSIS SQGSKRYYSG DRSYYRCTMD NCRVKKRVER LAEDPRMVIT TYEGRHVHSP 300 SHDLDDQDSR SPSHLNNFFW |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30249 | 0.0 | bud |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008392017.2 | 0.0 | probable WRKY transcription factor 13 | ||||
TrEMBL | A0A498HYP5 | 0.0 | A0A498HYP5_MALDO; Uncharacterized protein | ||||
STRING | XP_008392017.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4079 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 7e-48 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000176224 |