PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000175240
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 303aa    MW: 34284.4 Da    PI: 6.0443
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000175240genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.84.6e-23127187259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dg +WrKYGqK + ++++pr+Y+rCt +   gC+++k+v++ +++p + ++tY geH+++
  MDP0000175240 127 EDGQAWRKYGQKIILNAPYPRAYFRCTRKfdqGCKATKQVQQIQDNPLTYQTTYIGEHTCR 187
                    89*************************99999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-23113187IPR003657WRKY domain
SuperFamilySSF1182901.44E-23120187IPR003657WRKY domain
PROSITE profilePS5081120.266121189IPR003657WRKY domain
SMARTSM007749.7E-36126188IPR003657WRKY domain
PfamPF031063.3E-23127187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGTNHKRLIG ELHEGXKTAX ELQILLQNPY GDRVLAEELL MKIMTTFAET LSVLTASDGH  60
EDHQSAASGE VHQVKPEPSQ VEHSHCGDRS SEDSGESRKT QAFKDRRGCY KRRKTCQSWT  120
VTSTKIEDGQ AWRKYGQKII LNAPYPRAYF RCTRKFDQGC KATKQVQQIQ DNPLTYQTTY  180
IGEHTCRAMI KPSPMIIGSN PRDSQTVSSE SGTPHHQNPS FFGTSAPSIL IAKQEDYKVG  240
TPSDVTDNSM WHDXKDHLDL SETVGICVSS NEDVVSNMHW DEDMDYVVKS INFEEDFNFE  300
SFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-24120187269OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.237680.0fruit| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388364.20.0WRKY DNA-binding transcription factor 70-like
TrEMBLA0A498KKJ70.0A0A498KKJ7_MALDO; Uncharacterized protein
STRINGXP_008388364.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-42WRKY DNA-binding protein 70