PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000174818 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | Trihelix | ||||||||
Protein Properties | Length: 168aa MW: 19307.7 Da PI: 10.9254 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 72.2 | 9.3e-23 | 31 | 99 | 1 | 69 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 rW++q +laL+++r +m+ ++r+++ k p W+ev kk+++ g++rs+k+Ckek+en+ k+++++keg + MDP0000174818 31 RWPRQDTLALLQIRADMDITFRDANIKCPSWKEVPKKLAALGYHRSAKKCKEKFENVYKYHRRTKEGPW 99 8****************************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.377 | 30 | 88 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 8.1E-14 | 30 | 97 | No hit | No description |
CDD | cd12203 | 4.05E-19 | 30 | 95 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MARIIIQVKK RSEMVIRKLS RGGERSFGGN RWPRQDTLAL LQIRADMDIT FRDANIKCPS 60 WKEVPKKLAA LGYHRSAKKC KEKFENVYKY HRRTKEGPWV LFKLGSTSQK QVISLMSLSH 120 QPPMARCSRA FLLDLLLTIL TQDLQHTAAF LPRTKTMADV DYTVTVGS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.10018 | 4e-93 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009343632.1 | 3e-41 | PREDICTED: trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A498IQS2 | 8e-40 | A0A498IQS2_MALDO; Uncharacterized protein | ||||
STRING | XP_009343632.1 | 1e-40 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21033 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-34 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000174818 |