PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000174149
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 341aa    MW: 38023.2 Da    PI: 7.8663
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000174149genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12163210355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L   ++YIk+Lq
  MDP0000174149 163 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDSIKYIKQLQ 210
                    6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.942160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-17163226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-18164223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-12165214No hitNo description
SMARTSM003532.6E-14166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEISSRGGLS ELGMEDPFFI NQWQYMNSLD ELGMLPLAAA FGENLQHSQF HPIFNLKTPI  60
DNSHTAIDRP TKQLKTDGWT SCKTDHLVSN PQVASLPPNI LSFVNSHHAN QMPVLKPKGE  120
GAAVCSKSTN TLPSDILLSQ GSFGNRNYSS NGISTTTRLS QTQDHIIAER KRREKLSQRF  180
IALSAIVPGL KKMDKASVLG DSIKYIKQLQ DKVKTLEEQT RNKNMESVVF VKKTQLFANS  240
DSSCSDENSS TGPFDTTLPE IEARFCDNNV LIRIHCEKRK GIVEKTIAEV EKLQLKFINS  300
SVMTFGSCAL DVTIIAQMEA EFSLSVKDLV KNLRAXFELF M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14164224869Transcription factor MYC2
5gnj_B1e-14164224869Transcription factor MYC2
5gnj_E1e-14164224869Transcription factor MYC2
5gnj_F1e-14164224869Transcription factor MYC2
5gnj_G1e-14164224869Transcription factor MYC2
5gnj_I1e-14164224869Transcription factor MYC2
5gnj_M1e-14164224869Transcription factor MYC2
5gnj_N1e-14164224869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173ERKRRE
2169174RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372895.20.0transcription factor bHLH18-like
SwissprotQ9T0727e-60BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A498JUI50.0A0A498JUI5_MALDO; Uncharacterized protein
STRINGXP_008372895.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-61bHLH family protein