PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000173577
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 591aa    MW: 66854.1 Da    PI: 7.4257
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000173577genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.8e-06326226
                   -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                   k++lC+ffa  G C  G+ C F+H+
  MDP0000173577  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                   99****6666.*************5 PP
2zf-CCCH21.83.3e-073454526
                   --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                   +C f+++ G C +G+rC++ H+
  MDP0000173577 34 ICTFYQK-GACAFGSRCRYEHV 54
                   7******.***********997 PP
3zf-CCCH20.39.7e-07142165226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    ++++C+ fa+ G C++G++C+ +Hg
  MDP0000173577 142 DRAICS-FAAAGSCPRGEKCPHIHG 165
                    588999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0982956IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-53253IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375140167IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.34E-13199273No hitNo description
Gene3DG3DSA:3.30.40.106.2E-10202268IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.13E-4208268No hitNo description
SMARTSM001841.4E-7209266IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.43209267IPR001841Zinc finger, RING-type
PfamPF000975.9E-7209266IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180233242IPR017907Zinc finger, RING-type, conserved site
SMARTSM003565.7296324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.155296325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKAS PNNICTFYQK GACAFGSRCR YEHVKASRAQ  60
SSGSSSSTNS QPSLAVDSAS LALPVRTLAS RVSLAPLSLS ELSASSXPFL PPSKPAWNGS  120
LEDDYENDEV NVGETWSTRP EDRAICSFAA AGSCPRGEKC PHIHGDLCPS CGKHCLHPYR  180
PLEREEHMKT CEEKQKQLEA LKRSQEIECS VCLERVLSKP TVAERKFGIL SECDHPFCIS  240
CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY NSKEEKQEIV ESYKARLRSI  300
DCKHFDFGNG NCPFGTSCFY KTSLVFPRAC SGICIIGLAA LDNRLLQSKI SICDEDFATX  360
ATGSSLSLFV SFXCFYYTSG ALNLDSFSSL HTVKPGSYVW KFHRPPPRRP PPRRPPPRRY  420
DIVPMDVIIH MFEHLEELDD YMFEDLENED LNPWERELLM HMGLDTSAHN NCYRQTKSIM  480
SCILSSSSNF ICNGSYFRSF YCHHAYRDGR LEEVALRHIG NEDGQTVIAT NIRLSDFLSD  540
LHIRIFFFHQ EHIRSSHAGF SNGKWNAPVV CKNWLLDGYI QLCESRHAWL P
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.117650.0fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028952684.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X2
SwissprotE0X9N41e-146C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A251Q9780.0A0A251Q978_PRUPE; Uncharacterized protein
STRINGXP_008349950.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-134C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]