PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000172887 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 148aa MW: 15798.7 Da PI: 9.215 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.1 | 2.6e-12 | 16 | 40 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C f++++G+Ck+G++CkF H+ MDP0000172887 16 GVQPCTFYLQNGQCKFGSTCKFDHP 40 5689********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.5E-5 | 14 | 41 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.187 | 14 | 42 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-10 | 16 | 40 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-7 | 17 | 45 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-6 | 18 | 41 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MSYSMEKINV LLFGQGVQPC TFYLQNGQCK FGSTCKFDHP VQTMRYDLSA SSLVDMPVVQ 60 YPVGSLLATL APSSSSSDLR PEFLSASKRD TYSTRVPSSG NTSSSSGGLI FSQSGSVSLS 120 DVQLSSQTSS PLSNSRSTRP GGAFRRSI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12211 | 0.0 | fruit |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008389189.1 | 1e-83 | zinc finger CCCH domain-containing protein 32-like isoform X1 | ||||
Refseq | XP_017192654.1 | 1e-84 | zinc finger CCCH domain-containing protein 32-like isoform X3 | ||||
Refseq | XP_028956222.1 | 2e-84 | zinc finger CCCH domain-containing protein 32-like isoform X2 | ||||
Swissprot | Q84W91 | 5e-31 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A498ISN9 | 2e-63 | A0A498ISN9_MALDO; Uncharacterized protein | ||||
STRING | XP_008389189.1 | 4e-83 | (Malus domestica) | ||||
STRING | XP_008389190.1 | 2e-84 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 1e-19 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000172887 |