PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000172804 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 280aa MW: 31450.1 Da PI: 8.117 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 28 | 78 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +g+WvAeI+d k+ r +lg+f taeeAa+a+++a+ l+g MDP0000172804 28 CKFVGVRQRS-SGKWVAEIKDtT----KKIRMWLGTFETAEEAARAYDEAAYLLRG 78 799****999.7*********33....36**********************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.36E-31 | 28 | 88 | No hit | No description |
Pfam | PF00847 | 1.4E-12 | 28 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.994 | 29 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-36 | 29 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-19 | 29 | 87 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-28 | 29 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-7 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-7 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MEHQAPKQQK GVLANKQRKF KERTKSKCKF VGVRQRSSGK WVAEIKDTTK KIRMWLGTFE 60 TAEEAARAYD EAAYLLRGSN TRTNFATHVP SNSPLSLKIX NLLNKKKSLK QCPVSSTPNS 120 LNSTPTATST RTSNKYTSFS DGSAFSIATF SETFLPNCKS QKNLQVFDDA YRPDISNCID 180 DLQPGLFHNH FGLQWPLLTG FDQLPITHEG MDLAKGNALT VQRSVAVEPE VTEFECLEVE 240 RQISASFYTM NGENEYFDNE YNAGDALWDL PSLSQLFCLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-14 | 30 | 89 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-14 | 30 | 91 | 6 | 68 | ATERF1 |
3gcc_A | 1e-14 | 30 | 91 | 6 | 68 | ATERF1 |
5wx9_A | 2e-14 | 29 | 85 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008366134.2 | 0.0 | ethylene-responsive transcription factor ERN1-like | ||||
TrEMBL | A0A498IKG4 | 0.0 | A0A498IKG4_MALDO; Uncharacterized protein | ||||
STRING | XP_008384383.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3341 | 30 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-25 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000172804 |