PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000172744
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 301aa    MW: 33969.7 Da    PI: 6.9777
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000172744genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-18142196256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ ++tkeq  +Le+ F+++ ++  ++++eLA+kl+L  rqV vWFqNrRa+ k
  MDP0000172744 142 RKKLRLTKEQSSTLEDSFREHTTLIPKQKQELARKLNLRPRQVEVWFQNRRARTK 196
                    78889************************************************98 PP
2HD-ZIP_I/II118.92.8e-38142230190
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                    +kk+rl+keq+++LE+sF+e+++L p++K+elar+L+l+prqv+vWFqnrRARtk+kq+E d+e Lk+++++lkeen+rL+ke +eL+ +
  MDP0000172744 142 RKKLRLTKEQSSTLEDSFREHTTLIPKQKQELARKLNLRPRQVEVWFQNRRARTKLKQTEADFELLKQCCETLKEENRRLHKELQELK-S 230
                    69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-17127192IPR009057Homeodomain-like
SuperFamilySSF466892.34E-17129199IPR009057Homeodomain-like
PROSITE profilePS5007117.362138198IPR001356Homeobox domain
SMARTSM003893.4E-16140202IPR001356Homeobox domain
CDDcd000863.07E-16141199No hitNo description
PfamPF000466.3E-16142196IPR001356Homeobox domain
PROSITE patternPS000270173196IPR017970Homeobox, conserved site
SMARTSM003409.8E-17198241IPR003106Leucine zipper, homeobox-associated
PfamPF021832.9E-9198233IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGFDHEACNT GLGLSLGCQA NPDHHTNLQA FDLDHQKKKK IQLKYDHLLP ALTLGPSSGD  60
SKIEAAESDD HLHQVVHVQA QEQVSSPCSG AVSSFSNSSS FKRDRDMGVE EIEGEEERVV  120
NITTSSRVSD ELYDQDHEGS PRKKLRLTKE QSSTLEDSFR EHTTLIPKQK QELARKLNLR  180
PRQVEVWFQN RRARTKLKQT EADFELLKQC CETLKEENRR LHKELQELKS MKQTATAAAP  240
FYMQFPTATL TMCPSCEKIC XGGDHHNHNH NNGSSTSPFL IGSNKTHLIF NPYSTHPSTA  300
C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190198RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.86460.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361424.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
TrEMBLA0A498HVJ80.0A0A498HVJ8_MALDO; Uncharacterized protein
STRINGXP_008393675.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-63HD-ZIP family protein