PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000172464 | ||||||||
Common Name | GATA7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GATA | ||||||||
Protein Properties | Length: 321aa MW: 35536.3 Da PI: 5.7252 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.5 | 8.7e-19 | 240 | 273 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g+ktLCnaCG+++++ + MDP0000172464 240 CSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 273 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.1E-81 | 18 | 317 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 3.3E-14 | 234 | 288 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.94E-14 | 236 | 297 | No hit | No description |
PROSITE profile | PS50114 | 11.174 | 238 | 270 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.1E-14 | 238 | 271 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.67E-14 | 239 | 288 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 240 | 265 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.7E-16 | 240 | 273 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MEYCIEAKAL KSSLRRELAV KSTQHVLLEE LWCATGISGV PCEDFSVDDL LDLSNGEFED 60 GSVEEEEEEK ESVSVDDEIS NSSSLVLPDS DSGLATQLLV PDDDLAELEW VSHFVDDSLP 120 DLSLFHTIGT QKPEALLMNR FEPEPKPVPL RAPLFPFQVP VKPRTKRYKP ASRVWSSSSS 180 CSPSSSPCSS GFSFSTPCLI FNPVQSMDVF VGEPAAKKQK KKPAVQTGEG SIGGQFQRRC 240 SHCQVQKTPQ WRTGPLGPKT LCNACGVRFK SGRLFPEYRP ACSPTFSGAV HSNSHRKVLE 300 MRKRKDVGEP EPLLNRMIRS F |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.872 | 0.0 | bud| cell culture| fruit| leaf| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280850.1 | 0.0 | GATA transcription factor 5-like | ||||
Refseq | XP_017192108.1 | 0.0 | GATA transcription factor 5-like isoform X1 | ||||
TrEMBL | D9ZIZ4 | 0.0 | D9ZIZ4_MALDO; GATA transcription factor | ||||
STRING | XP_008391583.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 2e-53 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000172464 |
Entrez Gene | 103453783 |