PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000172441
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 1079aa    MW: 125106 Da    PI: 8.0053
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000172441genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.8e-06238257625
                    -SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                    C+f+++tG C++G rC++ H
  MDP0000172441 238 CPFHLKTGACRFGQRCSRVH 257
                    ******************99 PP
2zf-CCCH25.52.3e-08367394126
                    --S---SGGGGTS..--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                    +k ++C  ++++   tC++G  C+F+H+
  MDP0000172441 367 WKVAICGEYMKSRykTCSRGTACNFIHC 394
                    899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.732232260IPR000571Zinc finger, CCCH-type
SMARTSM0035631233259IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4237257IPR000571Zinc finger, CCCH-type
PRINTSPR018485.5E-37238257IPR009145U2 auxiliary factor small subunit
PRINTSPR018485.5E-37257277IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3306.2E-24264362IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501029.576264364IPR000504RNA recognition motif domain
CDDcd125402.81E-48265363No hitNo description
SMARTSM003617.8E-4277360IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018485.5E-37293308IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549283.33E-15296365IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018485.5E-37321343IPR009145U2 auxiliary factor small subunit
PRINTSPR018485.5E-37348372IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.878366396IPR000571Zinc finger, CCCH-type
SMARTSM003560.03366395IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-6367394IPR000571Zinc finger, CCCH-type
PRINTSPR018485.5E-37386398IPR009145U2 auxiliary factor small subunit
SuperFamilySSF525401.21E-10899999IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.1E-119121003IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000468.54E-59381004No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1079 aa     Download sequence    Send to blast
MESTLAEAAA KXGEGVGGGI VPRTDSLGAE KGMTNRKEKR KAMKKMKRKQ TRKEMALKER  60
EEHDAILNNP LELAKITMIE XEEAERSERE RKIFEERERA WMEAMEVKRK KQIEEEEEEE  120
QRRIKALEEE DELSRNEQVE NANDGNEVDE WDYEEGPAEI IWQGNEIILK KKRVKIPKKN  180
TDQESRKKDS DRPXSNPLPP QSEAFSDYKS SSMSAQQLIE SVAQQVPHFG TEQDKAHCPF  240
HLKTGACRFG QRCSRVHFCP DKSSTLLIKN MYNGPGLAWE QDEGLEYTDE EXERCYEEFY  300
EDVHTEFLKX GEIINFKVCR NGAFHLRGNV YIHYKSLDSA VVAYQSVNGR YFAGKQISCE  360
FINVTRWKVA ICGEYMKSRY KTCSRGTACN FIHCFRNPGG DYEWADSDRP PPKFWARKMV  420
ALFGYSDADD KPMVEENFGQ WRNSSKMSLG DSERYGLRRS RSRGRDSDSG RRYDNENYXL  480
EGTCRQKRTG DEDLCEENKN LRNYNPRRSR KWDAESDGEL LEREIDRDRH RGHTRHNSRQ  540
QNRDHKNKTY ETESXGDLSQ RNRRAQHGTR KSSSQQRKVE SPDEYRDREN KNHEVNWDWS  600
DRDRDKDAAY QDNGRHSGQK RKVRCRGDHK DIKNRARDTD GXRSDNNMKG DEHDSRRKSM  660
EPSSHSSKAS KFSNHGGRST RSCSTDLSDD LLENXAERPP SHAWKRSKRL DEVSDISHDD  720
KVPTLDLKHG RDHLSIXMRE ADSLVENLKS RGTHESSSVG PDDXRFNSDV LTDKEDRWEP  780
ENSSVENEIY HTSKRKAGSS ESCDSGRPGP SKGRDESSDF DSEVYYYSKI GWEKGEKSDR  840
VTHSEHGKSR RKSRNKDRKL DSDDRPRQGS SQSSHRRHSS GLDDATDSSD GDKESVRKHK  900
RHHAGHRSRD HKRPSWWQXT VIHPFLFSLT TSXASTPVSA HTSAGKTVVA SYAIAISLRX  960
KQRVIYTSXI KALSNQKYRE FXEEFSDVGL MTGDVTIXPN ASXLDAMHAF FWIWIRLLLI  1020
RCGRNWMEIL CAAAADLGVE SSFLLAWNWI MMVIGKLWSR LDWRCQRSLV DVVSIQPWW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A9e-322293939167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.116190.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950772.10.0zinc finger CCCH domain-containing protein 5
TrEMBLA0A498HRR40.0A0A498HRR4_MALDO; Uncharacterized protein
STRINGXP_008363366.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-138C3H family protein