PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000171465
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 302aa    MW: 32101 Da    PI: 5.9413
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000171465genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.2e-08232252526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C +far G+Ck G++C+F H+
  MDP0000171465 232 PCLYFAR-GYCKNGASCRFLHS 252
                    8******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.507227254IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4229253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5230252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5231252IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6232252IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDSYEATRIV FSRIQNLDPE NASKIMGLLL IQDHGEKEMI RLAFGPEAFL HSVILKSRKE  60
LGVSLSSNSP SXPSTPSXXP FTNPIAISRQ NSCSSSSRLS LTIPNLSSSS ASWAAISELR  120
TQEEINSFYG GSNGGVPADV MDEFQLQEQL SFLNDGCPPP MVGPKSPDFF YPQSNLSSSP  180
TTASDPNLFP SLHGSANWGG GGGGGGGPLH RRSCSVSDVC MEDPNSGFGW KPCLYFARGY  240
CKNGASCRFL HSGGLGDAVV DGGGQVVVGS PSKLEMMDHE XLLRSKTAQQ QRLAAASQLM  300
AA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354400.11e-169PREDICTED: zinc finger CCCH domain-containing protein 53
TrEMBLA0A498KAF31e-166A0A498KAF3_MALDO; Uncharacterized protein
STRINGXP_008349338.10.0(Malus domestica)
STRINGXP_008363326.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66967