PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000171430
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SRS
Protein Properties Length: 586aa    MW: 61387.4 Da    PI: 8.5009
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000171430genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702218.51.4e-673685283153
         DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaesk 97 
                    s t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + aaa   a +++ +++++k++r l  ++q++ s+t++s+++++
  MDP0000171430 368 SSTMTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSAAAGGGAGSNSgSTSSAKKPR-LVGASQTTPSHTSTSNTTPP 462
                    6789*************************************************9999999999884455555555.569999************** PP

         DUF702  98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                    ++ +tss          lP +v+++avf+cvrv++v+dge+e+aYq++v+i+GhvfkG+L+dqG++
  MDP0000171430 463 RSYDTSSshqdagfkdpLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKINGHVFKGFLHDQGVD 528
                    *****999********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.0E-61370528IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.3E-27372414IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.4E-29480527IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MSLSMPLSSQ SHNGWIALNT HKPTKTREEK VREGVRGREE PTSFSWLSRK HAEEGFVGRE  60
SELRGKDKKR LISTSSERER EREREEKKRT REEKGMDGYG SMMMMMREKV VATTRRLPSD  120
SGAFADWVGS SSSNNSAATG RPTTHHPDID VLSLGFNAGP AAAGPSSASP STMSMWSSAP  180
SNRPLTYGHL PPEMAGMVGL RDVFVVAPAA AYHXGHDPNL LSSSDHHHSI NASNNPAPAL  240
GVGVGVIXLL TATPCLAPPN MSNVDDDDED THTPAGMSMG MGMSMSMMSG GHQRNNRSSS  300
AAGGGGIQLW QQNPPHFFKK NHHEAAVTTN LGGIHLNQDG GGGGRGGGGG GGGNNIMNAG  360
SAAASSGSST MTCQDCGNQA KKDCTHRRCR TCCKSRGFDC ATHVKSTWVP AARRRERQLM  420
SAAAGGGAGS NSGSTSSAKK PRLVGASQTT PSHTSTSNTT PPRSYDTSSS HQDAGFKDPL  480
PGQVRAPAVF KCVRVTAVED GEDEYAYQAV VKINGHVFKG FLHDQGVDGR EGFPDISELH  540
LGGGGTTSGG NGGRNGASSP ILDPSDIYAA SGAGLLGGSN FGNPIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342350GGRGGGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.224854e-96cell culture| fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008363042.20.0protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A498KCA60.0A0A498KCA6_MALDO; Uncharacterized protein
STRINGXP_008363042.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.26e-68Lateral root primordium (LRP) protein-related