PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000171191
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 817aa    MW: 90178 Da    PI: 5.2462
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000171191genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.4e-09242262526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+f+a+ G+C +G++CkF H+
  MDP0000171191 242 ICDFYAK-GWCIRGSSCKFLHV 262
                    6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0032237263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225237264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6239261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4242265IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6242262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MPTETSEGSS ESQRPRKPPK KAHRTNLHSR ALRMPHSADD KSPEPAEFSG SDIEEQKEEE  60
EEEEDPELLE EEVEEEEEEE AEEAEAEEEE AEGEENMEDE LEGRVEVDMD LSDSPIRSRD  120
HHNDDYMVAN KDAGILSGQR TSVHLHNEVN GHLCNSEIMD AKVASSCRVG GEEMADATPI  180
RDHLGEEVRS VVNPGDEMKQ VDMQQRNGRK QIDSRSSALE TGTTTVSPAA ETSGRSKPPA  240
IICDFYAKGW CIRGSSCKFL HVKDNLNSSQ PHPEGDVANS TREVQLDEGL RDITVRTRSP  300
RFRDPLASSS GSDFAFSSHL SSEKIPFLEH IGRQHQFHEK RKFPTVIGEE SNVGVSTDAK  360
KLHSSKDDPG FLSSLKDIGR DDQTNWPAVK DNSIFMSSLH PEPGFFSIGS ISSSGKYFIG  420
KNSSHSSSME EPAGIWSQRM HRDHSSPLVN LALNSSSRNL STTALFPTSR ISSWTGFSLP  480
SSYSNLDSSP HDTLKLFDQS RDYRSSTRSS PLLKSSSPFS SSELKSLPTT VSLRSAEIKT  540
KLSSNDWEPS VPFQPSFILP RAFLSSSGRQ YDPLRDSIEL PKFSNISGEA SFYPEGATVG  600
NKLQPQHGES ASGTTRPACD GDTNSMSSHT TYHEKVLVNS CYTRDHNSPV TEAETAGTSA  660
VCQNGTMTGE ENPLGPPHPK CSTKQNKASS ATGDSRHQSD GSRHQEGTKL GRFREKNEVD  720
GEHLTDGDVQ QESKAVKNFR AALVDLVKEL LKPKWREGSL SKDAHNMIVK RAVEKIISAF  780
QPHQIPSTIE TVVQYLSACR PKISKLVEGY VEKYGKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352887.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X2
TrEMBLA0A498IWP90.0A0A498IWP9_MALDO; Uncharacterized protein
STRINGXP_008383703.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-42C3H family protein