PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000170630
Common NameSPL11
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 313aa    MW: 35399.1 Da    PI: 8.8478
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000170630genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.52.1e-3961137278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    C v+gC+adls+++eyhrrh+vCe hskapvv+v+g+++rfCqqCsrfh+l +fD+ krsCr+rL++hn+rrrk+++
  MDP0000170630  61 CLVDGCRADLSRCREYHRRHRVCELHSKAPVVVVRGEQKRFCQQCSRFHSLVDFDKVKRSCRKRLNGHNQRRRKPKP 137
                    **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-3056122IPR004333Transcription factor, SBP-box
PROSITE profilePS511413158135IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.86E-3660141IPR004333Transcription factor, SBP-box
PfamPF031102.0E-2961134IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEYWDFEDSD LAALVGSSIS QPQMEHRPAE SLGLEXDPVK LSSSGRLSGS NNGGDQLKFL  60
CLVDGCRADL SRCREYHRRH RVCELHSKAP VVVVRGEQKR FCQQCSRFHS LVDFDKVKRS  120
CRKRLNGHNQ RRRKPKPESF YFSSHFFFST YQGPRILQFS XPRVCATTNV RCIWPVKDKK  180
GAEXMRSNXH HQWLSATDER SXPNSFNGGG DKQFXFLQAN DPKAAAGNRA APQAXMCQQQ  240
TFPTTVAAAS PKSTKSCALY LLSSHPTQNS VSGPDHLAQS TVTTTHPCSH DVEDRPVNPE  300
MMFPMRPDCF WDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-26601341084squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.110023e-71bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6738530.0KF673853.1 Malus domestica cultivar Fuji SBP-box transcription factor (SPL11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281001.10.0squamosa promoter-binding-like protein 18
TrEMBLA0A498J3P60.0A0A498J3P6_MALDO; Uncharacterized protein
STRINGXP_008379100.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-39SBP family protein